The only software for windows I am aware of is YUMI which is part of pendrivelinux. See the site below.
http://www.pendrivelinux.com/yumi-mu...t-usb-creator/
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Or is there any way to create a Multi boot iSO?
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Yes. If you are planning to install systems which are derived from Ubuntu as the ones you mention are, you should be able to simply copy the iso file directly to a partition on the flash drive, then install the Grub bootloader there. You will need to create your own menu which is the grub.cfg file so if you are a new Linux user, that could be a problem. Obviously, you won't be able to do this if all you have is a windows operating system. Some examples and a brief explanation at the site below:
https://help.ubuntu.com/community/Gr...OBoot/Examples
It is possible to create a multi-boot CD/DVD also although the method is different and more complicated. You need the stage2 eltorito file with Grub Legacy and the eltorito.img file with Grub2 which isn't present on a default Ubuntu AFAIK. You would then need to create an iso with the mkisofs or genisoimage programs. Again, for this to work, you will need a Linux operating system.
You can test by installing VirtualBox or other virtualization software on windows to test.