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Edit the menu. There should be an option to "run as a different user", type root in to the user name box. Save and close menu. Run program. (nb. this may only apply to KDE)
Or create a shortcut to the program on your menu, making sure the command is su "/path/to/program"
Might be helpful if you told us which programs you are thinking of - there aren't many progs I can think of where you'd need to run as root.
hey, you have to use kdesu, you type:
kdesu <program name>
then it will ask for the root password and you're done
<EDIT>It will open a graphical window with option of saving the pass</EDIT>
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