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I have gentoo running on an amd64 system (a hp pavilion zv6000 laptop) and there is a problem with the clock. For example, a video file will be played too fast and a double click requires the user to be on amphetamines.
Pure guess, but maybe there is an interrupt conflict with the timer/clock. Try 'cat /proc/interrupts' to see if anything is sharing with the timer or rtc (real time clock).
Have you tried booting with noapic as a kernel parameter on the command line? That seems to be a common reply for all the HP/Compaq 64 bit line like the one you have, the Presario V2000z and so on
I booted the kernel with the noapic option and it solved all the problems! I did not try it before because, when I was using Debian (before I installed Gentoo), I had lots of apic error messages I never saw with Gentoo and using the noapic option prevented a few things to work. But now this option solved all the problems I was experiencing. There are a few things that do not work (the most obvious being the dhcp client) but I can do without.
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