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I do not have a solution to your booting problem but something to keep in mind is that I normally try to stay away from software raid's, I have set them up before and you use to much proccessor trying to just run the raid, you are further ahead to buy one more hard drive and a ide controller card that supports raid.
If you do that your linux machine will not even see the 3 drives in the raid as 3 separate drives but as one and the install will go smoother and also all the work in keeping the raid running will be done by hardware which is much faster. Just my opinion though.