On PCI latency: Instant is impossible; Dead fast is possible. I don't know how you measure 50ms, as I would consider that pretty instant. I would expect windows to throw up equally complicated graphics faster than wine/linux, but it's quite possible linux uses a simpler graphics.
Having things faster and hanging every 45 seconds is weird in the extreme - it's an oxymoron, actually. How long does it hang for? Are you sure that's not your latency?
If I were trying to do what you are trying to do (Thank goodness I'm not
, I would set up one distro for ATI, and one for Nvidia, and swap cards or the like.
/In a moment of reversing himself
if the games are priority number 1, and
if you can swallow pride, and
if you have the cash for a new video card of substance and
if you are not a purist, and
if you are prepared to be a traitor and ...(etc.)
Try a windows version instead of the new video card. I always felt certain things were done better in windows, and being windows is one of them; graphics is another.
Ideally grab a beta or trial version if you can, because the idea is probably madness, and you will find that out quickly. It would be a shame to have parted for money to find that out (again)