The ffmpeg version offered by the default Debian sources isn't compiled with support for xvid and some other codecs. You should use the one from
www.debian-multimedia.org instead, or compile your own with support for those libraries.
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The default ffmpeg configuration:
--enable-gpl --enable-pp --enable-swscaler --enable-pthreads --enable-libvorbis --enable-libtheora --enable-libogg --enable-liba52 --enable-libdts --enable-libgsm --enable-dc1394 --disable-debug --enable-shared --prefix=/usr
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The debian-multimedia configuration:
--prefix=/usr --libdir=${prefix}/lib --shlibdir=${prefix}/lib --incdir=${prefix}/include/ffmpeg --enable-shared --enable-libmp3lame --enable-gpl --enable-libfaad --mandir=${prefix}/share/man --enable-libvorbis --enable-pthreads --enable-libfaac --enable-libxvid --enable-pp --enable-libamr-nb --enable-libamr-wb --enable-x11grab --enable-libogg --enable-libgsm --enable-libx264 --enable-liba52 --enable-libtheora --extra-cflags=-Wall -g -fPIC -DPIC --cc=ccache cc --enable-swscaler
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