[SOLVED] ??? Error: libXp.so.6: cannot open shared object file: No such file or directory

castles · 01-17-2012, 06:12 PM

Hello:

I am trying to run a program on linux (x86_64) that requires Matlab Compiler. When I attempt to run the program, I get the following error...

Quote:

[lz225@dbgap linux64]$ bash ./run_quantisnp.sh $MCR_ROOT
------------------------------------------
Setting up environment variables
---
Found MCR Java JRE version: 1.5.0
LD_LIBRARY_PATH is .:/home/lz225/v76/runtime/glnxa64:/home/lz225/v76/bin/glnxa64:/home/lz225/v76/sys/os/glnxa64:/home/lz225/v76/sys/java/jre/glnxa64/jre1.5.0/lib/amd64/native_threads:/home/lz225/v76/sys/java/jre/glnxa64/jre1.5.0/lib/amd64/server:/home/lz225/v76/sys/java/jre/glnxa64/jre1.5.0/lib/amd64/client:/home/lz225/v76/sys/java/jre/glnxa64/jre1.5.0/lib/amd64
Fatal error loading library /home/lz225/v76/bin/glnxa64/libmwmclmcr.so Error: libXp.so.6: cannot open shared object file: No such file or directory

Googling this issue did not really help me out. I don't understand why I'm getting this issue as /home/lz225/v76/bin/glnxa64/libmwmclmcr.so exists! Can anyone suggest a possible solution to this problem?

(I am trying to run QuantiSNP v1.1 http://www.well.ox.ac.uk/QuantiSNP/ if it helps)

Thanks for your help!

CTM · 01-17-2012, 07:05 PM

libmwmclmcr.so does indeed exist: it's a shared library that ships with QuantiSNP. When it was compiled, it was dynamically linked with another library - libXp.so.6 - that doesn't exist on your system. libXp.so is usually part of a package (unsurprisingly) named "libXp" in most distributions, so you'll need to install that. Where you go from here depends on your Linux distribution - which one are you using?

jthill · 01-17-2012, 07:23 PM

As I see CTM says above, the error isn't libmwmclmcr.so missing, it's libXp.so.6 missing -- which the loader discovered because libmwmclmcr requires it.

Googling for matlab compiler linux 64bit produced many likely-looking hits, including this one which I have a hunch is yours. If you'll post the results of

Code:

locate libXp.so

and

Code:

ldd /path/to/libmwmclmcr.so

that will at least answer that question for sure.

castles · 01-17-2012, 08:11 PM

Thanks for your replies!

@CTM

The Linux distribution is:

Quote:

LSB Version: :core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch

rinting-4.0-amd64

rinting-4.0-noarch
Distributor ID: RedHatEnterpriseServer
Description: Red Hat Enterprise Linux Server release 6.1 (Santiago)
Release: 6.1
Codename: Santiago

@jthill

Nothing output to the terminal when I ran

Quote:

locate libXp.so

The output for the second:

Quote:

[lz225@dbgap ~]$ ldd /home/lz225/v76/bin/glnxa64/libmwmclmcr.so
linux-vdso.so.1 => (0x00007fff329ff000)
libmwmcr.so => /home/lz225/v76/bin/glnxa64/libmwmcr.so (0x00007ff3a6c95000)
libut.so => /home/lz225/v76/bin/glnxa64/libut.so (0x00007ff3a67cc000)
libmx.so => /home/lz225/v76/bin/glnxa64/libmx.so (0x00007ff3a6668000)
libmwservices.so => /home/lz225/v76/bin/glnxa64/libmwservices.so (0x00007ff3a6422000)
libmex.so => /home/lz225/v76/bin/glnxa64/libmex.so (0x00007ff3a6313000)
libmwctfarchiver.so => /home/lz225/v76/bin/glnxa64/libmwctfarchiver.so (0x00007ff3a61f5000)
libmwctfrt.so => /home/lz225/v76/bin/glnxa64/libmwctfrt.so (0x00007ff3a60ea000)
libmwctfrtcrypto.so => /home/lz225/v76/bin/glnxa64/libmwctfrtcrypto.so (0x00007ff3a5f2f000)
libmwm_interpreter.so => /home/lz225/v76/bin/glnxa64/libmwm_interpreter.so (0x00007ff3a4e87000)
libmwm_dispatcher.so => /home/lz225/v76/bin/glnxa64/libmwm_dispatcher.so (0x00007ff3a4d33000)
libmwmpath.so => /home/lz225/v76/bin/glnxa64/libmwmpath.so (0x00007ff3a4c18000)
libmwjmi.so => /home/lz225/v76/bin/glnxa64/libmwjmi.so (0x00007ff3a4ad8000)
libmwdservices.so => /home/lz225/v76/bin/glnxa64/libmwdservices.so (0x00007ff3a49ce000)
libmwudd.so => /home/lz225/v76/bin/glnxa64/libmwudd.so (0x00007ff3a47e9000)
libz.so => /home/lz225/v76/bin/glnxa64/libz.so (0x00007ff3a46da000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x00007ff3a44ae000)
libstdc++.so.6 => /home/lz225/v76/bin/glnxa64/../../sys/os/glnxa64/libstdc++.so.6 (0x00007ff3a42ac000)
libm.so.6 => /lib64/libm.so.6 (0x00007ff3a4028000)
libgcc_s.so.1 => /home/lz225/v76/bin/glnxa64/../../sys/os/glnxa64/libgcc_s.so.1 (0x00007ff3a3f1b000)
libc.so.6 => /lib64/libc.so.6 (0x00007ff3a3b89000)
libmwiqm.so => /home/lz225/v76/bin/glnxa64/libmwiqm.so (0x00007ff3a3a7d000)
libmwbridge.so => /home/lz225/v76/bin/glnxa64/libmwbridge.so (0x00007ff3a395f000)
libmat.so => /home/lz225/v76/bin/glnxa64/libmat.so (0x00007ff3a3840000)
libmwm_parser.so => /home/lz225/v76/bin/glnxa64/libmwm_parser.so (0x00007ff3a34dd000)
libmwmcos.so => /home/lz225/v76/bin/glnxa64/libmwmcos.so (0x00007ff3a328a000)
libmwgui.so => /home/lz225/v76/bin/glnxa64/libmwgui.so (0x00007ff3a309a000)
libmwhg.so => /home/lz225/v76/bin/glnxa64/libmwhg.so (0x00007ff3a2d88000)
libuij.so => /home/lz225/v76/bin/glnxa64/libuij.so (0x00007ff3a2c51000)
libmwudd_mi.so => /home/lz225/v76/bin/glnxa64/libmwudd_mi.so (0x00007ff3a2adb000)
libmwuinone.so => /home/lz225/v76/bin/glnxa64/libmwuinone.so (0x00007ff3a29d5000)
libmwm_ir.so => /home/lz225/v76/bin/glnxa64/libmwm_ir.so (0x00007ff3a288b000)
libmwmathutil.so => /home/lz225/v76/bin/glnxa64/libmwmathutil.so (0x00007ff3a2737000)
libmwuix.so => /home/lz225/v76/bin/glnxa64/libmwuix.so (0x00007ff3a250e000)
librt.so.1 => /lib64/librt.so.1 (0x00007ff3a2305000)
libdl.so.2 => /lib64/libdl.so.2 (0x00007ff3a2101000)
libicudata.so.32 => /home/lz225/v76/bin/glnxa64/libicudata.so.32 (0x00007ff3a2000000)
libicuuc.so.32 => /home/lz225/v76/bin/glnxa64/libicuuc.so.32 (0x00007ff3a1e12000)
libicui18n.so.32 => /home/lz225/v76/bin/glnxa64/libicui18n.so.32 (0x00007ff3a1be9000)
libicuio.so.32 => /home/lz225/v76/bin/glnxa64/libicuio.so.32 (0x00007ff3a1add000)
libncurses.so.5 => /lib64/libncurses.so.5 (0x00007ff3a18ba000)
libmwprofiler.so => /home/lz225/v76/bin/glnxa64/../../bin/glnxa64/libmwprofiler.so (0x00007ff3a179d000)
libmwmathrng.so => /home/lz225/v76/bin/glnxa64/../../bin/glnxa64/libmwmathrng.so (0x00007ff3a1694000)
libmwmlib.so => /home/lz225/v76/bin/glnxa64/../../bin/glnxa64/libmwmlib.so (0x00007ff3a1588000)
libmwm_pcodeio.so => /home/lz225/v76/bin/glnxa64/../../bin/glnxa64/libmwm_pcodeio.so (0x00007ff3a1475000)
libmwmtok.so => /home/lz225/v76/bin/glnxa64/../../bin/glnxa64/libmwmtok.so (0x00007ff3a136d000)
libmwm_pcodegen.so => /home/lz225/v76/bin/glnxa64/../../bin/glnxa64/libmwm_pcodegen.so (0x00007ff3a1254000)
libboost_thread-gcc-mt-1_33_1.so.1.33.1 => /home/lz225/v76/bin/glnxa64/../../bin/glnxa64/libboost_thread-gcc-mt-1_33_1.so.1.33.1 (0x00007ff3a1148000)
libxerces-c.so.26 => /home/lz225/v76/bin/glnxa64/../../bin/glnxa64/libxerces-c.so.26 (0x00007ff3a0cb9000)
libmwdatasvcs.so => /home/lz225/v76/bin/glnxa64/libmwdatasvcs.so (0x00007ff3a0b9f000)
libboost_filesystem-gcc-mt-1_33_1.so.1.33.1 => /home/lz225/v76/bin/glnxa64/../../bin/glnxa64/libboost_filesystem-gcc-mt-1_33_1.so.1.33.1 (0x00007ff3a0a8d000)
/lib64/ld-linux-x86-64.so.2 (0x0000003835800000)
libhdf5.so.0 => /home/lz225/v76/bin/glnxa64/libhdf5.so.0 (0x00007ff3a086d000)
libmwir_xfmr.so => /home/lz225/v76/bin/glnxa64/libmwir_xfmr.so (0x00007ff3a0762000)
libmwhardcopy.so => /home/lz225/v76/bin/glnxa64/libmwhardcopy.so (0x00007ff3a0637000)
libmwnumerics.so => /home/lz225/v76/bin/glnxa64/libmwnumerics.so (0x00007ff3a0335000)
libXm.so.3 => /home/lz225/v76/bin/glnxa64/../../sys/os/glnxa64/libXm.so.3 (0x00007ff39ff87000)
libXext.so.6 => /usr/lib64/libXext.so.6 (0x00007ff39fd74000)
libXp.so.6 => not found
libXt.so.6 => /usr/lib64/libXt.so.6 (0x00007ff39fb0f000)
libX11.so.6 => /usr/lib64/libX11.so.6 (0x00007ff39f7cf000)
libXp.so.6 => not found
libtinfo.so.5 => /lib64/libtinfo.so.5 (0x00007ff39f5ad000)
libmwxmlcore.so => /home/lz225/v76/bin/glnxa64/libmwxmlcore.so (0x00007ff39f430000)
libmwlapack.so => /home/lz225/v76/bin/glnxa64/libmwlapack.so (0x00007ff39f2ed000)
libfftw3.so.3 => /home/lz225/v76/bin/glnxa64/libfftw3.so.3 (0x00007ff39f13c000)
libfftw3f.so.3 => /home/lz225/v76/bin/glnxa64/libfftw3f.so.3 (0x00007ff39ef90000)
libmwcolamd.so => /home/lz225/v76/bin/glnxa64/libmwcolamd.so (0x00007ff39ee8a000)
libmwamd.so => /home/lz225/v76/bin/glnxa64/libmwamd.so (0x00007ff39ed81000)
libmwcholmod.so => /home/lz225/v76/bin/glnxa64/libmwcholmod.so (0x00007ff39ec0e000)
libmwumfpack.so => /home/lz225/v76/bin/glnxa64/libmwumfpack.so (0x00007ff39ea6e000)
libSM.so.6 => /usr/lib64/libSM.so.6 (0x00007ff39e865000)
libICE.so.6 => /usr/lib64/libICE.so.6 (0x00007ff39e649000)
libXp.so.6 => not found
libxcb.so.1 => /usr/lib64/libxcb.so.1 (0x00007ff39e42d000)
libuuid.so.1 => /lib64/libuuid.so.1 (0x00007ff39e229000)
libXau.so.6 => /usr/lib64/libXau.so.6 (0x00007ff39e025000)

Thanks again!

edit: Tried to find libXp.so.6 for RedHat 6.X ... got a little overwhelmed, haha.

edit2: Downloading ftp://ftp.muug.mb.ca/mirror/redhat/r...5.2-2.i386.rpm

Hopefully this works.. the MCR is for amd64 not i386 though. (couldn't find the rpm for amd64) :S

jthill · 01-17-2012, 09:47 PM

You don't have it installed at all, and you need the 64-bit version which will be easiest, yay. I think you want to do rpm -q --whatprovides libXp.so.6 to find what to install to get you that library, and then probably yum install thatpackage, but I don't do RHEL so if it works, great, if someone sees a needed correction I hope they chime in before you see this.

CTM · 01-18-2012, 03:42 AM

I understand it's possible to install a package containing a file with rpm by querying based on the name of the file, so you might have some luck with this:

Code:

yum install libXp.so.6

knudfl · 01-18-2012, 04:08 AM

$ yum provides */libXp.so.6

$ yum search libXp
( Will list libXp.i686, libXp.x86_64. Both can be installed.)

# yum install libXp.<arch>

.

castles · 01-18-2012, 12:49 PM

The yum install worked perfectly. Thanks for your help, everyone!

saranvellai · 03-25-2018, 11:03 PM

Hi..

I'm trying to install trace graph ..
I followed these steps...

1.$sudo chmod 777 mglinstaller
2../mglinstaller
3.After installing mglinstaller, you will get a folder called glnx86 in /home/sandeep/tracegraph202/bin directory

4.Copy all the files from /home/ubuntu/tracegraph202 directiy and paste them in /home/sandeep/tracegraph202/bin/glnx86/ directory
5. $gedit .bashrc
6. LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/ubuntu/tracegraph202/bin/glnx86
7. $ sudo export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/home/ubuntu/tracegraph202/bin/glnx86
8. chmod 777 trgraph
9. $./trgraph

when i give ./trgraph it throws this error
./trgraph: error while loading shared libraries: libXext.so.6: cannot open shared object file: No such file or directory

kindly help me to resolve this error..

knudfl · 03-26-2018, 04:31 AM

Post #9, @saranvellai :

Please do not ask questions in old threads.
Use your own thread, or open a new thread.
Answered here https://www.linuxquestions.org/quest...-a-4175624522/