I think that the reason that pstree was suggested to you was that pstree will attempt to present (in a visually managable way) the parent/child relationship of your running process. I have cut and pasted a sample below to demonsterate this. You can see that I am running gnome-teminal, and from there I have three bask shells running and a handful of programs running amongst them.
├─gnome-terminal─┬─bash───dnetc─┬─dnetc
│ │ └─tl
│ ├─bash───pstree
│ ├─bash───vim
│ └─gnome-pty-helpe
Just for clarification, in the first shell I am running a script called dnetc that simply launces two programs, one by the same name and one called tl.
Now in your case, you should try launching some of the programs from this mystery window, and while they are running, then run pstree and look to see if any of the programs that you have launched are showing up as a sub-branch off of another program, if so, then this is likely the program that you are looking to identify.
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