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Where are you doing this changes? Directly in your terminal or in some config file?
Changes you do in your terminal will only be for the terminal you do them in, if you want them to last you should edit your ~/.bashrc file. Just put the command you want run last in the file (on a new line), and it will be run every time you open a terminal.
Yes, changes made from console (or ssh) will not last, so you need to edit your bashrc.
You might even be able to locate the line where the cp alias is set originally, in that case you can just comment it out with a '#' in front of the line.
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