Yes during boot before you reach the OS stage you'll be greeted with the RAID card's screen.
Typically that screen will prompt you to press <F8> or whatever to configure your array.
Now if you setup a RAID-1 array there then virtually everything after that stage will see only 1 HD.
For whether Linux will see 1 or 2 disks...
Well, it actually depends whether your RAID card is truly a "hardware RAID" card.
If it is then congrats you got a single disk
~
Now if that's a "software RAID" or the so-called "hardware-assisted RAID" the story is really not quite predictable.
I'm sure if any such RAID card is supported by Linux at all...
I've had experience with an on-board nVidia RAID chip, but its actually a "hardware-assisted RAID" and requires a driver in Windows in order to function.
And when I install Debian on that box, it saw 2 disks, the physical ones. So the so-called RAID chip was in fact useless
.