...I'm not entirely clear on what you want (but my brain's frazzled from writing project descriptions for tax returns all day).
If you want a method to discriminate "/usr/bin/bin1" and "/usr/local/bin/bin1" try adding an alias to your ~/.bashrc file:
Code:
# Assuming you want the program in /usr/bin
alias bin1='/usr/bin/bin1'
Then afterwards, just
to refresh your environment.