[SOLVED] Installing a numerical code on ubuntu 12.04

knudfl · 03-13-2013, 02:23 AM

# 15 : How old are your files ?

This "Correct.C" says : 15 months ago ..
https://vhub.org/tools/titan2d/brows...flow/Correct.C

Ref. https://vhub.org/tools/titan2d/brows...rc/src/geoflow
<
https://vhub.org/tools/titan2d/browser/trunk

There is a new Makefile.in : 12 hours ago
https://vhub.org/tools/titan2d/browser/trunk/src
... And a lot of other "12 hours" :
https://vhub.org/tools/titan2d/browser/trunk/src/src

-

Robert84 · 03-13-2013, 06:33 AM

I do not know how to check how old are my files, from the proprieties, it says that they have been modified last sunday.
I do not know how to see how old are they?

/usr/local/bin/mpicxx -I../gisapi/ -g -O2 -w -g -O2 -DMPICH_IGNORE_CXX_SEEK -I/usr/include -D__HAVE_HDF5__ -L/usr/lib -o titan titan-compare_key.o titan-delete_tab.o titan-hpfem.o titan-datread.o titan-hilbert.o titan-init_piles.o titan-update_topo.o titan-restart.o ../gisapi/libgisapi.a ../adapt/libadapt.a -L/usr/lib/gcc/i686-linux-gnu/4.6 -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../.. -lgfortran -lm -lquadmath ../datstr/libdatstr.a ../geoflow/libgeoflow.a ../useful/libuseful.a ../repartition/librepartition.a ../tecplot/libtecplot.a -lnsl -lz -lm -lhdf5 -lmpich -lpthread
../datstr/libdatstr.a(element2.o): In function `Element::correct(HashTable*, HashTable*, double, MatProps*, FluxProps*, TimeProps*, double*, double*, double*, double*)':
/home/user/bob/titan-2.0.1/src/datstr/element2.C:2463: undefined reference to `correct_'
../geoflow/libgeoflow.a(Correct.o): In function `correct(HashTable*, HashTable*, double, MatProps*, FluxProps*, TimeProps*, void*, double*, double*, double*, double*)':
/home/user/bob/titan-2.0.1/src/geoflow/Correct.C:107: undefined reference to `correct_'
collect2: ld returned 1 exit status
make[3]: *** [titan] Error 1
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/main'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/src'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/user/bob/titan-2.0.1'
make: *** [all] Error 2

From the output, you can see that I need two files, the paths are below, what you checked was a web that has titan2d software on line, I am not sure if the code written on line is the same that run on personal machine, for example, the datstr folder winch has element2.c file is missing in the vhub?!

/home/user/bob/titan-2.0.1/src/datstr/element2.C:2463: undefined reference to `correct_
/home/user/bob/titan-2.0.1/src/geoflow/Correct.C:107: undefined reference to `correct_'

best

Robert84 · 03-13-2013, 06:48 AM

Sorry, the Correct.c, the date is 2004/08/11
element2.C 143 2007-06-25

John VV · 03-13-2013, 02:19 PM

Just a thought
( Ubuntu it not my strong area )

you might be better off installing the older titan2.01 on say a os like CentOS 5.9

it is a bit older and works great for older legacy software

Univ. code can be fickle
sometimes a very old program will build on the new compilers ( i have some 15 year old "fortran" and "c" that builds with no issues )
and some 6 month old code that is a pain.

knudfl · 03-13-2013, 11:22 PM

# 18 .

Quote:

Sorry, the Correct.c, the date is 2004/08/11
element2.C 143 2007-06-25

2004 : That's a long time ago.
Do not expect to use the files on Ubuntu 12.04.

Suggest : Buy a new titan-2.01.
Or download / copy everything from the links, post # 16.

-

Robert84 · 03-14-2013, 08:33 PM

Thanks for you help but i did something different, I got it right, here is what I did:

Code:

user@osgeolive:~/bob/titan-2.0.1$ cd src
user@osgeolive:~/bob/titan-2.0.1/src$ cd geoflow
user@osgeolive:~/bob/titan-2.0.1/src/geoflow$ gfortran -c correct.f
user@osgeolive:~/bob/titan-2.0.1/src/geoflow$ ar r libgeoflow.a correct.o
user@osgeolive:~/bob/titan-2.0.1/src/geoflow$ cd ..
user@osgeolive:~/bob/titan-2.0.1/src$ cd ..
user@osgeolive:~/bob/titan-2.0.1$ make
make  all-recursive
make[1]: Entering directory `/home/user/bob/titan-2.0.1'
Making all in src
make[2]: Entering directory `/home/user/bob/titan-2.0.1/src'
Making all in header
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/header'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/header'
Making all in gisapi
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/gisapi'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/gisapi'
Making all in useful
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/useful'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/useful'
Making all in preproc
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/preproc'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/preproc'
Making all in datstr
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/datstr'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/datstr'
Making all in repartition
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/repartition'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/repartition'
Making all in adapt
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/adapt'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/adapt'
Making all in geoflow
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/geoflow'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/geoflow'
Making all in tecplot
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/tecplot'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/tecplot'
Making all in stochastic
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/stochastic'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/stochastic'
Making all in vectordatapreproc
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/vectordatapreproc'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/vectordatapreproc'
Making all in main
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/main'
/usr/local/bin/mpicxx -I../gisapi/ -g -O2 -w -g -O2 -DMPICH_IGNORE_CXX_SEEK  -I/usr/include -D__HAVE_HDF5__  -L/usr/lib -o titan titan-compare_key.o titan-delete_tab.o titan-hpfem.o titan-datread.o titan-hilbert.o titan-init_piles.o titan-update_topo.o titan-restart.o ../gisapi/libgisapi.a ../adapt/libadapt.a  -L/usr/lib/gcc/i686-linux-gnu/4.6 -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../.. -lgfortran -lm -lquadmath ../datstr/libdatstr.a ../geoflow/libgeoflow.a ../useful/libuseful.a ../repartition/librepartition.a ../tecplot/libtecplot.a -lnsl -lz -lm -lhdf5 -lmpich -lpthread 
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/main'
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src'
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/src'
Making all in scripts
make[2]: Entering directory `/home/user/bob/titan-2.0.1/scripts'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/scripts'
Making all in doc
make[2]: Entering directory `/home/user/bob/titan-2.0.1/doc'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/doc'
make[2]: Entering directory `/home/user/bob/titan-2.0.1'
make[2]: Leaving directory `/home/user/bob/titan-2.0.1'
make[1]: Leaving directory `/home/user/bob/titan-2.0.1'
user@osgeolive:~/bob/titan-2.0.1$ sudo make install
[sudo] password for user: 
Making install in src
make[1]: Entering directory `/home/user/bob/titan-2.0.1/src'
Making install in header
make[2]: Entering directory `/home/user/bob/titan-2.0.1/src/header'
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/header'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/header'
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/src/header'
Making install in gisapi
make[2]: Entering directory `/home/user/bob/titan-2.0.1/src/gisapi'
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/gisapi'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/gisapi'
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/src/gisapi'
Making install in useful
make[2]: Entering directory `/home/user/bob/titan-2.0.1/src/useful'
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/useful'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/useful'
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/src/useful'
Making install in preproc
make[2]: Entering directory `/home/user/bob/titan-2.0.1/src/preproc'
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/preproc'
test -z "/home/user/bob/titan-2.0.1/bin" || /bin/mkdir -p "/home/user/bob/titan-2.0.1/bin"
  /usr/bin/install -c titan_materialnames titan_preprocess '/home/user/bob/titan-2.0.1/bin'
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/preproc'
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/src/preproc'
Making install in datstr
make[2]: Entering directory `/home/user/bob/titan-2.0.1/src/datstr'
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/datstr'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/datstr'
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/src/datstr'
Making install in repartition
make[2]: Entering directory `/home/user/bob/titan-2.0.1/src/repartition'
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/repartition'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/repartition'
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/src/repartition'
Making install in adapt
make[2]: Entering directory `/home/user/bob/titan-2.0.1/src/adapt'
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/adapt'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/adapt'
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/src/adapt'
Making install in geoflow
make[2]: Entering directory `/home/user/bob/titan-2.0.1/src/geoflow'
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/geoflow'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/geoflow'
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/src/geoflow'
Making install in tecplot
make[2]: Entering directory `/home/user/bob/titan-2.0.1/src/tecplot'
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/tecplot'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/tecplot'
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/src/tecplot'
Making install in stochastic
make[2]: Entering directory `/home/user/bob/titan-2.0.1/src/stochastic'
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/stochastic'
test -z "/home/user/bob/titan-2.0.1/bin" || /bin/mkdir -p "/home/user/bob/titan-2.0.1/bin"
  /usr/bin/install -c lhsbed lhsvol lhstitanstats gentitanteststats '/home/user/bob/titan-2.0.1/bin'
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/stochastic'
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/src/stochastic'
Making install in vectordatapreproc
make[2]: Entering directory `/home/user/bob/titan-2.0.1/src/vectordatapreproc'
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/vectordatapreproc'
test -z "/home/user/bob/titan-2.0.1/bin" || /bin/mkdir -p "/home/user/bob/titan-2.0.1/bin"
  /usr/bin/install -c VecDataPreproc '/home/user/bob/titan-2.0.1/bin'
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/vectordatapreproc'
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/src/vectordatapreproc'
Making install in main
make[2]: Entering directory `/home/user/bob/titan-2.0.1/src/main'
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src/main'
test -z "/home/user/bob/titan-2.0.1/bin" || /bin/mkdir -p "/home/user/bob/titan-2.0.1/bin"
  /usr/bin/install -c titan '/home/user/bob/titan-2.0.1/bin'
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src/main'
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/src/main'
make[2]: Entering directory `/home/user/bob/titan-2.0.1/src'
make[3]: Entering directory `/home/user/bob/titan-2.0.1/src'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/home/user/bob/titan-2.0.1/src'
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/src'
make[1]: Leaving directory `/home/user/bob/titan-2.0.1/src'
Making install in scripts
make[1]: Entering directory `/home/user/bob/titan-2.0.1/scripts'
make[2]: Entering directory `/home/user/bob/titan-2.0.1/scripts'
test -z "/home/user/bob/titan-2.0.1/bin" || /bin/mkdir -p "/home/user/bob/titan-2.0.1/bin"
 /usr/bin/install -c titan_pilehelper titan_regionhelper r.gmfg.titan s.in.titan titan_gui.py '/home/user/bob/titan-2.0.1/bin'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/scripts'
make[1]: Leaving directory `/home/user/bob/titan-2.0.1/scripts'
Making install in doc
make[1]: Entering directory `/home/user/bob/titan-2.0.1/doc'
make[2]: Entering directory `/home/user/bob/titan-2.0.1/doc'
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/user/bob/titan-2.0.1/doc'
make[1]: Leaving directory `/home/user/bob/titan-2.0.1/doc'
make[1]: Entering directory `/home/user/bob/titan-2.0.1'
make[2]: Entering directory `/home/user/bob/titan-2.0.1'
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/user/bob/titan-2.0.1'
make[1]: Leaving directory `/home/user/bob/titan-2.0.1'
user@osgeolive:~/bob/titan-2.0.1$ cd bin]
bash: cd: bin]: No such file or directory
user@osgeolive:~/bob/titan-2.0.1$ cd bin
user@osgeolive:~/bob/titan-2.0.1/bin$ ls
frict.data         lhsvol        TEST2  titan_gui.py         titan_regionhelper
gentitanteststats  r.gmfg.titan  TEST3  titan_materialnames  VecDataPreproc
lhsbed             s.in.titan    TEST4  titan_pilehelper
lhstitanstats      TEST1         titan  titan_preprocess
user@osgeolive:~/bob/titan-2.0.1/bin$ python titan_gui.py

knudfl · 03-15-2013, 03:24 AM

Please edit posts #12 and #21 to use code tags.
http://www.linuxquestions.org/questi....php?do=bbcode
I.e. type [/code] at text end, and [code] at text start.
Or use the # button in the 'Advanced Editor'.

Robert84 · 03-15-2013, 03:55 AM

I did it

get in touch for a later linux problem

Robert84 · 04-30-2013, 10:28 PM

I wonder if someone can suggest me which is the error that I make in installing this numerical code in Ubuntu 12.04, here is what I did:

Code:

user@osgeolive:~/Bob/titan-3.0.0$ sh install-titan.sh
			install-titan.sh: 9: [: x/usr/local/bin/mpicxx: unexpected operator
			/usr
			install-titan.sh: 39: install-titan.sh: [[: not found
			checking for a BSD-compatible install... /usr/bin/install -c
			checking whether build environment is sane... yes
			checking for gawk... gawk
			checking whether make sets $(MAKE)... yes
			checking for C++ compiler default output file name... a.out
			checking whether the C++ compiler works... yes
			checking whether we are cross compiling... no
			checking for suffix of executables... 
			checking for suffix of object files... o
			checking whether we are using the GNU C++ compiler... yes
			checking whether /usr/local/bin/mpicxx accepts -g... yes
			checking for style of include used by make... GNU
			checking dependency style of /usr/local/bin/mpicxx... gcc3
			checking for gcc... /usr/local/bin/mpicc
			checking whether we are using the GNU C compiler... yes
			checking whether /usr/local/bin/mpicc accepts -g... yes
			checking for /usr/local/bin/mpicc option to accept ANSI C... none needed
			checking dependency style of /usr/local/bin/mpicc... gcc3
			checking for g77... no
			checking for f77... no
			checking for xlf... no
			checking for frt... no
			checking for pgf77... no
			checking for fort77... no
			checking for fl32... no
			checking for af77... no
			checking for f90... no
			checking for xlf90... no
			checking for pgf90... no
			checking for epcf90... no
			checking for f95... f95
			checking whether we are using the GNU Fortran 77 compiler... yes
			checking whether f95 accepts -g... yes
			checking how to run the C preprocessor... /usr/local/bin/mpicc -E
			checking for a BSD-compatible install... /usr/bin/install -c
			checking whether ln -s works... no, using cp -p
			checking whether make sets $(MAKE)... (cached) yes
			checking for ranlib... ranlib
			checking how to get verbose linking output from f95... -v
			checking for Fortran libraries of f95...  -L/usr/lib/gcc/i686-linux-gnu/4.6 -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../.. -lgfortran -lm -lgcc_s -lquadmath
			checking for special C compiler options needed for large files... no
			checking for _FILE_OFFSET_BITS value needed for large files... 64
			checking for _LARGE_FILES value needed for large files... no
			checking build system type... i686-pc-linux-gnu
			checking host system type... i686-pc-linux-gnu
			checking for pthread_create in -lpthread... yes
			checking for pkg-config... /usr/bin/pkg-config
			checking pkg-config is at least version 0.9.0... yes
			checking for MPICH2... yes
			checking for MPI_Init in -lmpich... yes
			checking for gzread in -lz... yes
			checking for H5open in -lhdf5... yes
			checking for G_gisinit in -lgis... no
			checking for gdal-config... gdal-config
			checking for GDALOpen in -lgdal... yes
			checking how to run the C++ preprocessor... /usr/local/bin/mpicxx -E
			checking for egrep... grep -E
			checking for ANSI C header files... yes
			checking for sys/types.h... yes
			checking for sys/stat.h... yes
			checking for stdlib.h... yes
			checking for string.h... yes
			checking for memory.h... yes
			checking for strings.h... yes
			checking for inttypes.h... yes
			checking for stdint.h... yes
			checking for unistd.h... yes
			checking gdal_priv.h, usability... no
			checking gdal_priv.h, presence... no
			checking for gdal_priv.h,... no
			checking ogr_spatialref.h usability... yes
			checking ogr_spatialref.h presence... yes
			checking for ogr_spatialref.h... yes
			checking for GDAL availability... yes
			checking for matherr in -lm... yes
			checking for inet_ntoa in -lnsl... yes
			checking for ANSI C header files... (cached) yes
			checking limits.h usability... yes
			checking limits.h presence... yes
			checking for limits.h... yes
			checking malloc.h usability... yes
			checking malloc.h presence... yes
			checking for malloc.h... yes
			checking for stdlib.h... (cached) yes
			checking for string.h... (cached) yes
			checking mpi.h usability... yes
			checking mpi.h presence... yes
			checking for mpi.h... yes
			checking hdf5.h usability... yes
			checking hdf5.h presence... yes
			checking for hdf5.h... yes
			checking for stdbool.h that conforms to C99... yes
			checking for _Bool... no
			checking for an ANSI C-conforming const... yes
			checking for inline... inline
			checking for size_t... yes
			checking whether sys/types.h defines makedev... yes
			checking for floor... yes
			checking for pow... yes
			checking for sqrt... yes
			checking for strchr... yes
			checking for strdup... yes
			configure: creating ./config.status
			config.status: creating Makefile
			config.status: creating doc/Makefile
			config.status: creating scripts/Makefile
			config.status: creating src/Makefile
			config.status: creating src/adapt/Makefile
			config.status: creating src/datstr/Makefile
			config.status: creating src/geoflow/Makefile
			config.status: creating src/gisapi/Makefile
			config.status: creating src/header/Makefile
			config.status: creating src/main/Makefile
			config.status: creating src/preproc/Makefile
			config.status: creating src/repartition/Makefile
			config.status: creating src/stochastic/Makefile
			config.status: creating src/tecplot/Makefile
			config.status: creating src/useful/Makefile
			config.status: creating src/vectordatapreproc/Makefile
			config.status: creating config.h
			config.status: config.h is unchanged
			config.status: executing depfiles commands
			make  all-recursive
			make[1]: Entering directory `/home/user/Bob/titan-3.0.0'
			Making all in src
			make[2]: Entering directory `/home/user/Bob/titan-3.0.0/src'
			Making all in header
			make[3]: Entering directory `/home/user/Bob/titan-3.0.0/src/header'
			make[3]: Nothing to be done for `all'.
			make[3]: Leaving directory `/home/user/Bob/titan-3.0.0/src/header'
			Making all in gisapi
			make[3]: Entering directory `/home/user/Bob/titan-3.0.0/src/gisapi'
			make[3]: Nothing to be done for `all'.
			make[3]: Leaving directory `/home/user/Bob/titan-3.0.0/src/gisapi'
			Making all in useful
			make[3]: Entering directory `/home/user/Bob/titan-3.0.0/src/useful'
			make[3]: Nothing to be done for `all'.
			make[3]: Leaving directory `/home/user/Bob/titan-3.0.0/src/useful'
			Making all in preproc
			make[3]: Entering directory `/home/user/Bob/titan-3.0.0/src/preproc'
			/usr/local/bin/mpicxx  -DOMPI_IGNORE_CXX_SEEK -w -g -O2 -DMPICH_IGNORE_CXX_SEEK  -L/usr/local/lib/pkgconfig/lib -lmpich -lmpichcxx -lopa -lpthread -lrt   -L/usr/lib -L/usr/lib -lgdal -o titan_materialnames  titan_materialnames-materialnames.o ../gisapi/libgisapi.a ../useful/libuseful.a  -lnsl -lm -lhdf5 -lz -lmpich -lpthread 
			../gisapi/libgisapi.a(GdalApi.o): In function `Initialize_GDAL_data(char const*)':
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:21: undefined reference to `GDALAllRegister'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:24: undefined reference to `GDALOpen'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:32: undefined reference to `OGRSpatialReference::OGRSpatialReference(char const*)'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:34: undefined reference to `OGRSpatialReference::importFromWkt(char**)'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:55: undefined reference to `GDALDataset::GetRasterXSize()'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:56: undefined reference to `GDALDataset::GetRasterYSize()'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:37: undefined reference to `OGRSpatialReference::GetUTMZone(int*) const'
			../gisapi/libgisapi.a(GdalApi.o): In function `load_GDAL_data()':
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:94: undefined reference to `GDALAllRegister'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:100: undefined reference to `GDALOpen'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:110: undefined reference to `GDALDataset::GetRasterBand(int)'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:120: undefined reference to `GDALRasterBand::GetXSize()'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:121: undefined reference to `GDALRasterBand::GetYSize()'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:132: undefined reference to `GDALRasterBand::RasterIO(GDALRWFlag, int, int, int, int, void*, int, int, GDALDataType, int, int)'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:114: undefined reference to `GDALColorTable::GetColorEntryCount() const'
			collect2: ld returned 1 exit status
			make[3]: *** [titan_materialnames] Error 1
			make[3]: Leaving directory `/home/user/Bob/titan-3.0.0/src/preproc'
			make[2]: *** [all-recursive] Error 1
			make[2]: Leaving directory `/home/user/Bob/titan-3.0.0/src'
			make[1]: *** [all-recursive] Error 1
			make[1]: Leaving directory `/home/user/Bob/titan-3.0.0'
			make: *** [all] Error 2
			Making install in src
			make[1]: Entering directory `/home/user/Bob/titan-3.0.0/src'
			Making install in header
			make[2]: Entering directory `/home/user/Bob/titan-3.0.0/src/header'
			make[3]: Entering directory `/home/user/Bob/titan-3.0.0/src/header'
			make[3]: Nothing to be done for `install-exec-am'.
			make[3]: Nothing to be done for `install-data-am'.
			make[3]: Leaving directory `/home/user/Bob/titan-3.0.0/src/header'
			make[2]: Leaving directory `/home/user/Bob/titan-3.0.0/src/header'
			Making install in gisapi
			make[2]: Entering directory `/home/user/Bob/titan-3.0.0/src/gisapi'
			make[3]: Entering directory `/home/user/Bob/titan-3.0.0/src/gisapi'
			make[3]: Nothing to be done for `install-exec-am'.
			make[3]: Nothing to be done for `install-data-am'.
			make[3]: Leaving directory `/home/user/Bob/titan-3.0.0/src/gisapi'
			make[2]: Leaving directory `/home/user/Bob/titan-3.0.0/src/gisapi'
			Making install in useful
			make[2]: Entering directory `/home/user/Bob/titan-3.0.0/src/useful'
			make[3]: Entering directory `/home/user/Bob/titan-3.0.0/src/useful'
			make[3]: Nothing to be done for `install-exec-am'.
			make[3]: Nothing to be done for `install-data-am'.
			make[3]: Leaving directory `/home/user/Bob/titan-3.0.0/src/useful'
			make[2]: Leaving directory `/home/user/Bob/titan-3.0.0/src/useful'
			Making install in preproc
			make[2]: Entering directory `/home/user/Bob/titan-3.0.0/src/preproc'
			/usr/local/bin/mpicxx  -DOMPI_IGNORE_CXX_SEEK -w -g -O2 -DMPICH_IGNORE_CXX_SEEK  -L/usr/local/lib/pkgconfig/lib -lmpich -lmpichcxx -lopa -lpthread -lrt   -L/usr/lib -L/usr/lib -lgdal -o titan_materialnames  titan_materialnames-materialnames.o ../gisapi/libgisapi.a ../useful/libuseful.a  -lnsl -lm -lhdf5 -lz -lmpich -lpthread 
			../gisapi/libgisapi.a(GdalApi.o): In function `Initialize_GDAL_data(char const*)':
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:21: undefined reference to `GDALAllRegister'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:24: undefined reference to `GDALOpen'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:32: undefined reference to `OGRSpatialReference::OGRSpatialReference(char const*)'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:34: undefined reference to `OGRSpatialReference::importFromWkt(char**)'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:55: undefined reference to `GDALDataset::GetRasterXSize()'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:56: undefined reference to `GDALDataset::GetRasterYSize()'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:37: undefined reference to `OGRSpatialReference::GetUTMZone(int*) const'
			../gisapi/libgisapi.a(GdalApi.o): In function `load_GDAL_data()':
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:94: undefined reference to `GDALAllRegister'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:100: undefined reference to `GDALOpen'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:110: undefined reference to `GDALDataset::GetRasterBand(int)'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:120: undefined reference to `GDALRasterBand::GetXSize()'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:121: undefined reference to `GDALRasterBand::GetYSize()'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:132: undefined reference to `GDALRasterBand::RasterIO(GDALRWFlag, int, int, int, int, void*, int, int, GDALDataType, int, int)'
			/home/user/Bob/titan-3.0.0/src/gisapi/GdalApi.cc:114: undefined reference to `GDALColorTable::GetColorEntryCount() const'
			collect2: ld returned 1 exit status
			make[2]: *** [titan_materialnames] Error 1
			make[2]: Leaving directory `/home/user/Bob/titan-3.0.0/src/preproc'
			make[1]: *** [install-recursive] Error 1
			make[1]: Leaving directory `/home/user/Bob/titan-3.0.0/src'
			make: *** [install-recursive] Error 1
			user@osgeolive:~/Bob/titan-3.0.0$

I hope someone can suggest me some hint foe the above error.

knudfl · 05-01-2013, 04:47 AM

# 24 .

Probably wrong : "sh install-titan.sh"
The Ubuntu default 'sh' is dash.
Please read the text file 'install-titan.sh', to know which shell is used.
If bash, the command should be : bash install-titan.sh
Or : ./install-titan.sh

How old is Titan-3.0.0 ?
This will tell : cd src && ls -Rl
If the files aren't from yesterday : Use gcc/g++ version 4.4 .
If some older : gcc/g++ version 4.1 .

Also : You could supply a download link for Titan-3.0.0 .
Then it's easier to see what's about.

-

Robert84 · 05-01-2013, 08:09 PM

I do not think that "sh install-titan.sh" is wrong. the userguide of titan sugegst me to do so. Anyhow. I will try to use bash as well.

titan-3.0.0 is (Updated Mar 28, 2012. However, the frist release of this version was around 2007.

the download link to Titan software and userguide is the following:

http://www.gmfg.buffalo.edu/software.php

knudfl · 05-04-2013, 08:22 AM

# 26 .

OK, got the package titan-3.0.0.tar.gz .

Which version of gdal are you using ?
And mpich2 ?

The script sh install-titan.sh do checks like ./configure, etc.
The disadvantage is that you cannot choose a compiler.
Some files in titan-3.0.0/ are still from 2007, so may be this will work :
$ export CC=gcc41 CXX=g++41 && ./configure && make
... If you have the right version of gdal.

-

Robert84 · 05-04-2013, 09:24 PM

Thanks to look to titan-3.0.0.

I am using As mpich2 the following version 'mpich2-1.3.2

As gdal packages, I have the following:
1) gdal-bin 1.9.2-2~precise4
2)libgdal-dev 1.9.2-2~precise4
3) libgdal1 1.9.2-2~precise4
4)libgdal1-1.7.0 1.7.3-6ubuntu3
5)libgdal1-1.9.0-grass 1.9.1-2~precise1
6)libgdal1-dev 1.9.2-2~precise4
7) python-3gdal 1.9.2-2~precise4

I am using Xubuntu 12.04 in osgeo-live 6.5 with a vitual box in windows 7.
ok I will try your suggestion and I get back to you. I tried bash and it is the same as sh.

Robert84 · 05-04-2013, 09:40 PM

$ export CC=gcc41 CXX=g++-41 && ./configure && make
... If you have the right version of gdal.

I tried this but I have the following error:

Code:

 user@osgeolive:~/Bob/titan-3.0.0$ export CC=gcc41 CXX=g++-41 && ./configure && make
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for C++ compiler default output file name... configure: error: C++ compiler cannot create executables
See `config.log' for more details

I show the config.log as well:

Code:

See `config.log' for more details.
user@osgeolive:~/Bob/titan-3.0.0$ cat config.log
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by titan configure 3.0.0, which was
generated by GNU Autoconf 2.59.  Invocation command line was

  $ ./configure 

## --------- ##
## Platform. ##
## --------- ##

hostname = osgeolive
uname -m = i686
uname -r = 3.2.0-41-generic
uname -s = Linux
uname -v = #66-Ubuntu SMP Thu Apr 25 03:28:09 UTC 2013

/usr/bin/uname -p = unknown
/bin/uname -X     = unknown

/bin/arch              = unknown
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
hostinfo               = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /home/user/bin
PATH: /usr/lib/lightdm/lightdm
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /usr/games
PATH: /usr/lib/gmt/bin
PATH: /usr/local/ossim/bin
PATH: /usr/local/rasdaman/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:1409: checking for a BSD-compatible install
configure:1464: result: /usr/bin/install -c
configure:1475: checking whether build environment is sane
configure:1518: result: yes
configure:1583: checking for gawk
configure:1599: found /usr/bin/gawk
configure:1609: result: gawk
configure:1619: checking whether make sets $(MAKE)
configure:1639: result: yes
configure:1914: checking for C++ compiler version
configure:1917: g++-41 --version </dev/null >&5
./configure: line 1918: g++-41: command not found
configure:1920: $? = 127
configure:1922: g++-41 -v </dev/null >&5
./configure: line 1923: g++-41: command not found
configure:1925: $? = 127
configure:1927: g++-41 -V </dev/null >&5
./configure: line 1928: g++-41: command not found
configure:1930: $? = 127
configure:1953: checking for C++ compiler default output file name
configure:1956: g++-41    conftest.cc  >&5
./configure: line 1957: g++-41: command not found
configure:1959: $? = 127
configure: failed program was:
| /* confdefs.h.  */
| 
| #define PACKAGE_NAME "titan"
| #define PACKAGE_TARNAME "titan"
| #define PACKAGE_VERSION "3.0.0"
| #define PACKAGE_STRING "titan 3.0.0"
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE "titan"
| #define VERSION "3.0.0"
| /* end confdefs.h.  */
| 
| int
| main ()
| {
| 
|   ;
|   return 0;
| }
configure:1998: error: C++ compiler cannot create executables
See `config.log' for more details.

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_env_CC_set=set
ac_cv_env_CC_value=gcc41
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=set
ac_cv_env_CXX_value=g++-41
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_MPICH2_CFLAGS_set=
ac_cv_env_MPICH2_CFLAGS_value=
ac_cv_env_MPICH2_LIBS_set=
ac_cv_env_MPICH2_LIBS_value=
ac_cv_env_PKG_CONFIG_set=
ac_cv_env_PKG_CONFIG_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_AWK=gawk
ac_cv_prog_make_make_set=yes

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/user/Bob/titan-3.0.0/missing --run aclocal-1.9'
AMDEPBACKSLASH=''
AMDEP_FALSE=''
AMDEP_TRUE=''
AMTAR='${SHELL} /home/user/Bob/titan-3.0.0/missing --run tar'
AUTOCONF='${SHELL} /home/user/Bob/titan-3.0.0/missing --run autoconf'
AUTOHEADER='${SHELL} /home/user/Bob/titan-3.0.0/missing --run autoheader'
AUTOMAKE='${SHELL} /home/user/Bob/titan-3.0.0/missing --run automake-1.9'
AWK='gawk'
BUILD_HDF5_FALSE=''
BUILD_HDF5_TRUE=''
CC='gcc41'
CCDEPMODE=''
CFLAGS=''
CPP=''
CPPFLAGS=''
CXX='g++-41'
CXXCPP=''
CXXDEPMODE=''
CXXFLAGS=''
CYGPATH_W='echo'
DEFS=''
DEPDIR=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP=''
EXEEXT=''
F77=''
FFLAGS=''
FLIBS=''
GDAL_CONFIG=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s'
LDFLAGS=''
LIBOBJS=''
LIBS=''
LN_S=''
LTLIBOBJS=''
MAKEINFO='${SHELL} /home/user/Bob/titan-3.0.0/missing --run makeinfo'
MPICH2_CFLAGS=''
MPICH2_LIBS=''
OBJEXT=''
PACKAGE='titan'
PACKAGE_BUGREPORT=''
PACKAGE_NAME='titan'
PACKAGE_STRING='titan 3.0.0'
PACKAGE_TARNAME='titan'
PACKAGE_VERSION='3.0.0'
PATH_SEPARATOR=':'
PKG_CONFIG=''
RANLIB=''
SET_MAKE=''
SHELL='/bin/bash'
STRIP=''
VERSION='3.0.0'
WITH_GDAL_FALSE=''
WITH_GDAL_TRUE=''
ac_ct_CC=''
ac_ct_CXX=''
ac_ct_F77=''
ac_ct_RANLIB=''
ac_ct_STRIP=''
ac_pt_PKG_CONFIG=''
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE=''
am__fastdepCXX_TRUE=''
am__include=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build=''
build_alias=''
build_cpu=''
build_os=''
build_vendor=''
datadir='${prefix}/share'
exec_prefix='NONE'
host=''
host_alias=''
host_cpu=''
host_os=''
host_vendor=''
includedir='${prefix}/include'
infodir='${prefix}/info'
install_sh='/home/user/Bob/titan-3.0.0/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localstatedir='${prefix}/var'
mandir='${prefix}/man'
mkdir_p='mkdir -p --'
oldincludedir='/usr/include'
prefix='NONE'
program_transform_name='s,x,x,'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

#define PACKAGE "titan"
#define PACKAGE_BUGREPORT ""
#define PACKAGE_NAME "titan"
#define PACKAGE_STRING "titan 3.0.0"
#define PACKAGE_TARNAME "titan"
#define PACKAGE_VERSION "3.0.0"
#define VERSION "3.0.0"

configure: exit 77
user@osgeolive:~/Bob/titan-3.0.0$

I hope it helps

knudfl · 05-05-2013, 03:15 AM

# 29 .

My typo : It is of course g++41, like post #9 :
Must be an executable that you actually have installed : $ which g++41

? But the most important is probably about the gdal version :
Ref. your errors in post #24.
We know that titan-3.0.0 will compile with gdal-1.6.3 :
That's the version used for "titan_3.0.0_amd64.deb".
Ref. http://www.gmfg.buffalo.edu/software.php
... And you are trying to use "libgdal1-dev 1.9.2".

I guess that mpich2-1.3.2 will do fine.
( titan_3.0.0_amd64.deb : mpich2-1.2 was used.)

(( Packages "(lib)mpich2-1.2 1.2.1-4" and "libgdal1-1.6.0 1.6.3-3",
"libgdal1-dev 1.6.3" are Ubuntu 10.04 versions.))

-