Originally Posted by NoSkillGuy
During the installation I set up LILO to be able to boot windows or college linux.
I'm betting that you installed lilo in the MBR of your primary hard drive. If you switch your boot order to boot off the old drive like you used to you should see the lilo prompt to pick an OS.
To Explain: Lilo does not need to be on the same drive as Linux, in fact in your setup it should not be. Instead lilo is installed on your primary drive and boots from there.