These days motherboards are moving away from PATA or IDE for SATA, so you will only get two IDE drives out of today's motherboards. Though you can still use PATA with a SATA by using a bridge card.
The following is an example what you could get and prices are from newegg.com.
MSI NF980-G65 AM3 NVIDIA nForce 980a SLI HDMI ATX
AMD Athlon II X2 250 Regor 3.0GHz
SeaSonic S12II-430B 430W
Crucial Ballistix 2GB (2 x 1GB) Model BL2KIT12864BA1336
Total: $357.97
or
MSI NF980-G65 AM3 NVIDIA nForce 980a SLI HDMI ATX
AMD Athlon II X2 250 Regor 3.0GHz
SeaSonic S12II-430B 430W
Crucial Ballistix 4GB (2 x 2GB) Model BL2KIT25664BA1336
Total: $379.97
or
MSI NF980-G65 AM3 NVIDIA nForce 980a SLI HDMI ATX
AMD Athlon II X2 250 Regor 3.0GHz
SeaSonic S12II-430B 430W
Patriot Viper II Sector 5 4GB (2 x 2GB) Model PVV34G1333LLK
Total:407.97
The motherboard includes IEEE-1394 or Firewire and nVidia graphics. The processor is a few times faster than your setup and that is only one core in the processor that I am comparing. It also comes with sound. The power supply is plenty even if you have a hand full of hard drives.
Another motherboard that I suggest is BIOSTAR TForce TA790GX A3+, but it uses ATI for graphics. A board that does not have on-board graphics is MSI 770-C45 that is cheap at $80 for its features. It needs a graphics card and you can use your existing Firewire card.
I suggest use something like XFX GeForce 9400 GT 1GB (PVT94GZAH2) as your graphics card if you are selecting motherboards with out on-board graphics. It is cheap around $50 and it provides you the ability to playback HD video if you want with the help of VDPAU.
Basically just about any motherboard will work. I suggest check the extras such as NIC and storage to make sure they are supported in Linux.
The following is my wish list for my next computer build when ever that will be to give an example.
http://secure.newegg.com/WishList/Pu...Number=8984714
I recommend upgrade to PCIe from your PCI graphics card because performance will suffer with a PCI graphics card. PCIe is PCI Express and it has higher bandwidth compared to AGP. AGP has higher performance than PCI.