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Hey Jeff,
Could you be more specific as to what you want to do? It almost sounds like rsync would be the tool you want, it can compare an existing directory and a "mirror" and only copy changes in the files (basically have the servers root directory back up to your local machine). If you reverse it, it can be used to reset the server root directory to a local directory.
Take a look at "man rsync" or just google the command.
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