I did a lot of reading in the nVidia download, could not understand much of it, (how to get out of X ?) and eventually bit the bullet.
Using 'sudo sh NVIDIA-.......9639-pkg1.run'
and a very helpful screen came up with more dyor warnings about running X etc, so I rebooted into 'recovery mode' to get a command prompt and ran it from there. It suggested I should be in run level 3 but I did not know where that was. I could not get out of the setup so I answered no to a few more questions but still it would not kick me out, all I could accept was OK. It seemed to loads ok and lo and behold my desktop came back. So all seemed well until I switched on 'Desktop Effects' and the same problem as before with the mouse buttons not responding properly. This time I discover that CNTL + left button works and SHIFT + left button works and the scroll wheel does all sorts of zooming on it own.
I followed a tutorial on Compiz with a couple more configuration commands but have not found the cube effects yet or any help on Ubuntu site or here on how to run them but I must say that the 'Wobbly windows' are not worth the crazy mouse effects.
Is there any way I can recover my mouse or maybe reinstall the mouse drivers?
P.S I have just found this page which should be helpful for setting up:
http://www.compiz.org/NVidia
P.P.S Just found CNTL + ALT + Mouse rotates the cube