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This gave me file config-diff that's a pretty big differences file (3587 lines). Are these lines matched up in similitude...are lines that are close in similarity to another compared?
That's what I like about tkdiff. Both files are shown side by side in a split window with the differences highlighted in color. I used it exactly for the same purpose - to find out what differences existed between two kernel configs when I had a problem with a new kernel.
I usually favor a strict command line for most things, but in this case the GUI works.
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