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If you feel an overwhelming urge to defrag something (Linux, Windows, or otherwise) the best way to do it is to copy the partition to another empty partition using a cp type command (don't use a disk image or dd type program), erase the original partition or reformat it, and then copy the partition back to the original. This process will produce results at least as good as the best that a defrag program will do. It also sometimes runs faster than a defrag program.
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