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I decided it would be best to put Linux in front and boot with Grub. So I took a box that had XP and Vista on the drive and shrunk the first OS (XP). Now I want to install Linux in front and I am not really sure how the Linux restore tools work.
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I'm not really sure what the above means. You don't need Linux 'in front', it doesn't matter which partition (primary or logical) it is on. If you want to boot with Grub, you will need to install it (stage1 file) to the master boot record of the machine.
Did you do an install of xp, vista then Linux or are you talking about a restore with clonezilla?
Haven't used clonezilla much but, my recollection is that you have options to create an image of a partition and restore it to another partition on the same or another disk.
You are also able to create an image of the entire disk and restore it to another disk.
You can also copy a partition to another partition on the same or another disk as well as copy the entire drive from one to another drive with or without the mbr/bootloader.
Clonezilla asks which partition you want to restore and which partition you want to restore to, same with disks.