This is not really a "newbie" question, and the thread would probably be more at home in the "Linux - Server" forum.
If you type the exact error message into Google, you'll find that the fix involves backing up your database files, clearing out the entire database directory and running mysql_install_db to regenerate the missing/corrupt system database. You can then copy your database files back.
You'll have to add back all user privileges manually, but they're gone now anyway.
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