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I generated a Linux OS USB Stick-It works.
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How? That's not enough information. What method did you use to create the bootable flash? First off, there are over 700 Linux distributions so a hint as to which you are using might be helpful.
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I then grouped all the Linux files in the stick in one folder for better organization so I can use the same stick for storage.
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You will have to explain that in a little more detail. The boot files are expected to be in a specific location and if you moved them to a sub-folder, I would not expect it to boot. Not sure if that is actually what you did? Is whichever Linux you put on the flash drive the ony OS? Did you create a persistent flash drive with whichever Linux you are using?
If you have another Linux OS you can boot, do that and run the command: fdisk -l(Lower case Letter L in the command) as root user and post the output here.