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I have the problem that one of my users isn't allowed to use the command "chmod", but they need it to use the makefile which gets used quite often. How can I make it so the user can use "chmod" without switching to root every time?
Every user should be able to user chmod. At least on thier own files. If your users need to chmod files that are not owned by them, then you need to rethink your permissions structure or think about setting up functional groups.
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