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I would use join if you're not going to escalate to perl. The input files would need to be sorted first for that. See the options -j and -a in "man join".
An advanced approach would be to use process substition to sort the files on the way in to join without changing anything on the disk.
I wish I could remove them, however it is a requirement to meet a certain standard that was adopted.
I was suggesting the removal be done along with the sort (piping) in the process substitution suggested above. That only affects the data your script sees, not the actual source data.
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