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It's a little odd to have an EFI partition without Windows. If you're not running Windows, you can generally shut off all of that EFI stuff and install normally.
No need for a separate boot partition, and definitely no need for it to be ext2. Whether or not you want a separate /home is up to you. With the speed of external SSDs you can now backup/restore the entire home directory in a few minutes, so I've stopped separating out /home on my machines...more hassle than it's worth.
My usual thing lately is to have just one ext4 partition /dev/sda1 for everything. If I want to do a "clean" install, I just use a liveCD to move all of the current contents into "/oldstuff" and then do a Debian install where I tell it to keep the current contents (rather than reformat first).
For a large drive full of data, this is a lot faster than making an extra backup somewhere (I do mean extra backup, because all of the data I care about already has at least one backup somewhere).
Not every flavor of Linux provides the option to install without reformatting, though. I do it my way because I'm always installing Debian or maybe a sufficient Debian-like distribution.
Then, after I do the fresh install, I have access to all of the old files in "oldstuff", which is convenient for transferring over various settings (such as ssh keys).
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