switch off that system
right now and don't use it until you fixed this.
you said that all you deleted was /etc/pam.d - so why are you copying, moving and/or touching other files?
boot the machine "from the outside" with e.g. a live usb, then copy the files you have in /home/user/Downloads back to /etc/pam.d.
make sure the directory was empty.
you will likely need to adjust permissions.
this is what it looks like on my (vanilla arch) system:
Code:
ls -al /etc/pam.d
total 140K
drwxr-xr-x 2 root root 4.0K Nov 21 21:46 ./
drwxr-xr-x 93 root root 12K Nov 22 08:29 ../
-rw-r--r-- 1 root root 160 Jul 28 16:18 chage
-rw-r--r-- 1 root root 160 Nov 7 14:57 chfn
-rw-r--r-- 1 root root 103 Jul 28 16:18 chgpasswd
-rw-r--r-- 1 root root 174 Jul 28 16:18 chpasswd
-rw-r--r-- 1 root root 160 Nov 7 14:57 chsh
-rw-r--r-- 1 root root 160 Jul 28 16:18 groupadd
-rw-r--r-- 1 root root 160 Jul 28 16:18 groupdel
-rw-r--r-- 1 root root 103 Jul 28 16:18 groupmems
-rw-r--r-- 1 root root 160 Jul 28 16:18 groupmod
-rw-r--r-- 1 root root 171 Nov 16 00:05 i3lock
-rw-r--r-- 1 root root 220 Nov 7 14:57 login
-rw-r--r-- 1 root root 174 Jul 28 16:18 newusers
-rw-r--r-- 1 root root 127 Oct 6 2017 other
-rw-r--r-- 1 root root 198 Jul 28 16:18 passwd
-rw-r--r-- 1 root root 155 Aug 24 01:10 polkit-1
-rw-r--r-- 1 root root 500 Nov 6 16:12 rlogin
-rw-r--r-- 1 root root 425 Nov 6 16:12 rsh
-rw-r--r-- 1 root root 160 Jul 28 16:18 shadow
-rw-r--r-- 1 root root 232 Oct 19 09:39 sshd
-rw-r--r-- 1 root root 366 Nov 7 14:57 su
-rw-r--r-- 1 root root 366 Nov 7 14:57 su-l
-rw-r--r-- 1 root root 97 Nov 15 20:30 sudo
-rw-r--r-- 1 root root 441 Oct 6 2017 system-auth
-rw-r--r-- 1 root root 143 Oct 6 2017 system-local-login
-rw-r--r-- 1 root root 675 Oct 6 2017 system-login
-rw-r--r-- 1 root root 143 Oct 6 2017 system-remote-login
-rw-r--r-- 1 root root 260 Oct 6 2017 system-services
-rw-r--r-- 1 root root 131 Nov 14 14:28 systemd-user
-rw-r--r-- 1 root root 160 Jul 28 16:18 useradd
-rw-r--r-- 1 root root 160 Jul 28 16:18 userdel
-rw-r--r-- 1 root root 160 Jul 28 16:18 usermod
let's hope the files you have allow you to get your system working again.
lesson learned:
- don't be root when you don't need to, and esp. do not use a graphical filemanager as root
- make routine system backups