You can go back to your old kernel (assuming you kept it), or recompile your 2.6.17.3 kernel with iptables support. It is possible (not sure on this) that it can be made as a module, which would save a bit of effort.
How did you configure your new kernel?
If you use:
make oldconfig
you can reuse your previous configuration (though this might not work now, because your oldconfig is your current configuration).
Else, if supported in the old kernel, you can get the configuration from /proc/config.gz (but only when the earlier kernel is running)
zcat /proc/config.gz > somefile
Then
make menuconfig
and load that somefile as your configuration.
This all a bit generic, and bypasses a lot of Ubuntu magic, so might get messy. Try the Ubuntu forums for different advice than here.
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