Okay, I got it figured out...
when I go to the Control Center and try to configure LILO, and change to administrator mode to make changes, the Control Center just sits there saying "Loading" and never does anything. It doesn't freeze, and will let me change to other panels in the Control Center without problems.
It's at that point that the offending program (lol I forgot the name) opens and doesn't close. It eventually DOES close itself after about fifteen minutes or so (I have no idea why).
And by the way, I tried as good as I could to kill it and it
wouldn't die. I even tried to send it, specifically, the KILL signal while root and it
still didn't die. It's a persistent little bugger. Of course, I'm not very familiar with linux yet, and I may have not been using the kill command properly, so that may have just been because of me.
so anyway... as long as I don't go to that part of the Control Center, it's fine and I have no problems!
Thanks, everyone, for the help!