Hello,
I have a Centos 6.4 Desktop version installed as a VM.
My ultimate goal is join computer into the domain and able to log in as DOMAIN\user into the CentOS.

I am able to log in computer into the domain but then I log in as Domain\DomainUser, the desktop is not created succesfully and bunch of messages of unable to create home dir inside of messages log file.

Thanks for your help

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MESSAGES.LOG
May 9 10:51:52 mylnx01 gnome-keyring-daemon[2733]: unable to create keyring dir
May 9 10:51:53 mylnx01 gnome-keyring-daemon[2733]: unable to create keyring dir
May 9 10:51:53 mylnx01 gnome-keyring-daemon[2733]: Can't open keyring save file /home/DOMAIN/test02/.gnome2/keyrings/.keyringA1WTWW

May 9 10:52:26 mylnx01 gnome-session[2742]: Gtk-CRITICAL: gtk_main_quit: assertion `main_loops != NULL' failed

May 9 10:52:55 mylnx01 gnome-session[2742]: WARNING: GsmSessionSave: Failed to create directory /home/DOMAIN/test02/.config/gnome-session/saved-session: Permission denied
May 9 10:52:55 mylnx01 gnome-session[2742]: WARNING: GsmSessionSave: could not create directory for saved session: /home/DOMAIN/test02/.config/gnome-session/saved-session
May 9 10:52:55 mylnx01 gnome-session[2742]: CRITICAL: gsm_manager_add_autostart_apps_from_dir: assertion `path != NULL' failed
May 9 10:52:56 mylnx01 spice-vdagent[2837]: Missing virtio device '/dev/virtio-ports/com.redhat.spice.0': No such file or directory
May 9 10:52:56 mylnx01 seahorse-daemon[2843]: DNS-SD initialization failed: Daemon not running
May 9 10:52:56 mylnx01 seahorse-daemon[2843]: init gpgme version 1.1.8
May 9 10:52:56 mylnx01 seahorse-daemon[2843]: couldn't create .ssh directory: /home/DOMAIN/test02/.ssh/
May 9 10:52:56 mylnx01 pulseaudio[2855]: core-util.c: Failed to stat home directory /home/DOMAIN/test02: No such file or directory
May 9 10:52:56 mylnx01 pulseaudio[2855]: lock-autospawn.c: Cannot access autospawn lock.
May 9 10:52:56 mylnx01 pulseaudio[2855]: main.c: Failed to acquire autospawn lock
May 9 10:53:01 mylnx01 pulseaudio[2863]: core-util.c: Failed to stat home directory /home/DOMAIN/test02: No such file or directory
May 9 10:53:01 mylnx01 pulseaudio[2863]: lock-autospawn.c: Cannot access autospawn lock.
May 9 10:53:01 mylnx01 pulseaudio[2863]: main.c: Failed to acquire autospawn lock
May 9 10:53:06 mylnx01 gnome-session[2742]: WARNING: Application 'metacity.desktop' failed to register before timeout
May 9 10:53:06 mylnx01 pulseaudio[2868]: core-util.c: Failed to stat home directory /home/DOMAIN/test02: No such file or directory
May 9 10:53:06 mylnx01 pulseaudio[2868]: lock-autospawn.c: Cannot access autospawn lock.
May 9 10:53:06 mylnx01 pulseaudio[2868]: main.c: Failed to acquire autospawn lock
May 9 10:53:09 mylnx01 abrtd: Directory 'ccpp-2013-05-09-10:53:09-2902' creation detected
May 9 10:53:09 mylnx01 abrt[2912]: Saved core dump of pid 2902 (/usr/bin/gnote) to /var/spool/abrt/ccpp-2013-05-09-10:53:09-2902 (3309568 bytes)
May 9 10:53:11 mylnx01 pulseaudio[2925]: core-util.c: Failed to stat home directory /home/DOMAIN/test02: No such file or directory
May 9 10:53:11 mylnx01 pulseaudio[2925]: lock-autospawn.c: Cannot access autospawn lock.
May 9 10:53:11 mylnx01 pulseaudio[2925]: main.c: Failed to acquire autospawn lock
May 9 10:53:14 mylnx01 kernel: Bridge firewalling registered
May 9 10:53:16 mylnx01 gnome-session[2742]: WARNING: Application 'gnome-panel.desktop' failed to register before timeout
May 9 10:53:17 mylnx01 pulseaudio[2998]: core-util.c: Failed to stat home directory /home/DOMAIN/test02: No such file or directory

May 9 10:53:11 mylnx01 pulseaudio[2925]: lock-autospawn.c: Cannot access autospawn lock.
May 9 10:53:11 mylnx01 pulseaudio[2925]: main.c: Failed to acquire autospawn lock
May 9 10:53:14 mylnx01 kernel: Bridge firewalling registered
May 9 10:53:16 mylnx01 gnome-session[2742]: WARNING: Application 'gnome-panel.desktop' failed to register before timeout
May 9 10:53:17 mylnx01 pulseaudio[2998]: core-util.c: Failed to stat home directory /home/DOMAIN/test02: No such file or directory
May 9 10:53:17 mylnx01 pulseaudio[2998]: lock-autospawn.c: Cannot access autospawn lock.
May 9 10:53:17 mylnx01 pulseaudio[2998]: main.c: Failed to acquire autospawn lock
May 9 10:53:21 mylnx01 pulseaudio[3064]: core-util.c: Failed to stat home directory /home/DOMAIN/test02: No such file or directory
May 9 10:53:21 mylnx01 pulseaudio[3064]: lock-autospawn.c: Cannot access autospawn lock.
May 9 10:53:21 mylnx01 pulseaudio[3064]: main.c: Failed to acquire autospawn lock
May 9 10:53:23 mylnx01 pulseaudio[3077]: core-util.c: Failed to stat home directory /home/DOMAIN/test02: No such file or directory
May 9 10:53:23 mylnx01 pulseaudio[3077]: lock-autospawn.c: Cannot access autospawn lock.
May 9 10:53:23 mylnx01 pulseaudio[3077]: main.c: Failed to acquire autospawn lock
May 9 10:53:24 mylnx01 pulseaudio[3139]: core-util.c: Failed to stat home directory /home/DOMAIN/test02: No such file or directory
May 9 10:53:24 mylnx01 pulseaudio[3139]: lock-autospawn.c: Cannot access autospawn lock.
May 9 10:53:24 mylnx01 pulseaudio[3139]: main.c: Failed to acquire autospawn lock
May 9 10:53:26 mylnx01 pulseaudio[3280]: core-util.c: Failed to stat home directory /home/DOMAIN/test02: No such file or directory
May 9 10:53:26 mylnx01 pulseaudio[3280]: lock-autospawn.c: Cannot access autospawn lock.
May 9 10:53:26 mylnx01 pulseaudio[3280]: main.c: Failed to acquire autospawn lock
May 9 10:53:27 mylnx01 abrtd: Sending an email...
May 9 10:53:27 mylnx01 abrtd: Email was sent to: root@localhost
May 9 10:53:28 mylnx01 abrtd: Duplicate: UUID
May 9 10:53:28 mylnx01 abrtd: DUP_OF_DIR: /var/spool/abrt/ccpp-2013-05-09-10:09:47-2883
May 9 10:53:28 mylnx01 abrtd: Corrupted or bad directory '/var/spool/abrt/ccpp-2013-05-09-10:53:09-2902', deleting
May 9 10:53:29 mylnx01 pulseaudio[3312]: core-util.c: Failed to stat home directory /home/DOMAIN/test02: No such file or directory
May 9 10:53:29 mylnx01 pulseaudio[3312]: lock-autospawn.c: Cannot access autospawn lock.
May 9 10:53:29 mylnx01 pulseaudio[3312]: main.c: Failed to acquire autospawn lock
May 9 10:53:31 mylnx01 pulseaudio[3316]: core-util.c: Failed to stat home directory /home/DOMAIN/test02: No such file or directory
May 9 10:53:31 mylnx01 pulseaudio[3316]: lock-autospawn.c: Cannot access autospawn lock.
May 9 10:53:31 mylnx01 pulseaudio[3316]: main.c: Failed to acquire autospawn lock
May 9 10:53:34 mylnx01 pulseaudio[3320]: core-util.c: Failed to stat home directory /home/DOMAIN/test02: No such file or directory
May 9 10:53:34 mylnx01 pulseaudio[3320]: lock-autospawn.c: Cannot access autospawn lock.
May 9 10:53:34 mylnx01 pulseaudio[3320]: main.c: Failed to acquire autospawn lock
May 9 10:53:36 mylnx01 pulseaudio[3324]: core-util.c: Failed to stat home directory /home/DOMAIN/test02: No such file or directory
May 9 10:53:36 mylnx01 pulseaudio[3324]: lock-autospawn.c: Cannot access autospawn lock.
May 9 10:53:36 mylnx01 pulseaudio[3324]: main.c: Failed to acquire autospawn lock
May 9 10:53:39 mylnx01 pulseaudio[3328]: core-util.c: Failed to stat home directory /home/DOMAIN/test02: No such file or directory


MAIL TO ROOT
From user@localhost.domain.local Thu May 9 10:10:03 2013
Return-Path: <user@localhost.domain.local>
X-Original-To: root@localhost
Delivered-To: root@localhost.domain.local
Received: by mylnx01.domain.local (Postfix, from userid 0)
id 0367E20190; Thu, 9 May 2013 10:10:02 -0600 (MDT)
Date: Thu, 09 May 2013 10:10:02 -0600
From: user@localhost.domain.local
To: root@localhost.domain.local
Subject: [abrt] full crash report
Message-ID: <518bca5a.oV8Gfv2CrAyoGea0%user@localhost>
User-Agent: Heirloom mailx 12.4 7/29/08
MIME-Version: 1.0
Content-Type: text/plain; charset=us-ascii
Content-Transfer-Encoding: 7bit

abrt_version: 2.0.8
cgroup:
cmdline: /usr/bin/gnote --panel-applet --oaf-activate-iid=OAFIID:GnoteApplet_Factory --oaf-ior-fd=20
executable: /usr/bin/gnote
kernel: 2.6.32-358.6.1.el6.i686
pid: 2883
pwd: /
time: Thu 09 May 2013 10:09:47 AM MDT
uid: 16777216
username: DOMAIN\test02

sosreport.tar.xz: Binary file, 511840 bytes

environ:
:'ORBIT_SOCKETDIR=/tmp/orbit-DOMAIN\\test02'
:HOSTNAME=mylnx01.domain.local
:IMSETTINGS_INTEGRATE_DESKTOP=yes
:TERM=dumb
:SHELL=/bin/bash
:XDG_SESSION_COOKIE=dfef45c5be29d53b315e87cc0000000a-1368115437.363158-1660864589
:HISTSIZE=1000
:GTK_RC_FILES=/etc/gtk/gtkrc:/home/DOMAIN/test02/.gtkrc-1.2-gnome2
:QTDIR=/usr/lib/qt-3.3
:QTINC=/usr/lib/qt-3.3/include
:IMSETTINGS_MODULE=none
:'USER=DOMAIN\\test02'
:SSH_AUTH_SOCK=/tmp/keyring-6z9Uxo/socket.ssh
:GNOME_KEYRING_SOCKET=/tmp/keyring-6z9Uxo/socket
:'USERNAME=DOMAIN\\test02'
:SESSION_MANAGER=local/unix:@/tmp/.ICE-unix/2716,unix/unix:/tmp/.ICE-unix/2716
ESKTOP_SESSION=gnome
:PATH=/usr/lib/qt-3.3/bin:/usr/local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/sbin
:'MAIL=/var/spool/mail/DOMAIN\\test02'
:_=/usr/bin/gnome-session
:QT_IM_MODULE=xim
:PWD=/
:XMODIFIERS=@im=none
:GDM_KEYBOARD_LAYOUT=us
:GNOME_KEYRING_PID=2707
:LANG=en_US.UTF-8
:GDM_LANG=en_US.UTF-8
:GDMSESSION=gnome
:HISTCONTROL=ignoredups
:SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass
:SHLVL=1
:HOME=/home/DOMAIN/test02
:GNOME_DESKTOP_SESSION_ID=this-is-deprecated
:'LOGNAME=DOMAIN\\test02'
:CVS_RSH=ssh
:QTLIB=/usr/lib/qt-3.3/lib
BUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-CDy2tW60in,guid=49360e3a40f969e2e4c343210000005f
:'LESSOPEN=|/usr/bin/lesspipe.sh %s'
:WINDOWPATH=1
ISPLAY=:0
:G_BROKEN_FILENAMES=1
:'XAUTHORITY=/var/run/gdm/auth-for-DOMAIN\\test02-htom70/database'

limits:
:Limit Soft Limit Hard Limit Units
:Max cpu time unlimited unlimited seconds
:Max file size unlimited unlimited bytes
*********************************************

Are you sure, you should be logging in as Domain\DomainUser not just DomainUser?

I have a Centos box joined to the domain via Windows and I have never logged in as Domain\DomainUser.

Also It looks like you have no HOMEDIR for the user you are logging in as:

You will need to setup a pam rule like pam_mkhomedir.so to make a directory upon login too.

Well, I did follow the following link and worked like a charm but not what i want, I want the Computer to be added into a specific OU.
Bind CentOS 6.3 to Active Directory Domain - YouTube
http://www.youtube.com/watch?v=c-vWAaocRU0
So, with my second VM, VM2 i want to replicate what happened on the YouTube video but through command line. I made sure i got all the settings from smb.conf, krb5.conf, nsswitch.conf, pam.d/system-auth etc, etc... I did create the directory DOMAIN but still not successful. If you check the YouTube video, the log in is as DOMAIN\domainuser.

Also, on my VM1 that I created by following the video, I do log in as domain\DomainUser.

See attached screenshots.

Attached Thumbnails

     

In the working VM1 I do see the following on secure log
May 10 19:30:44 mylnx00 pam: gdm-password: pam_winbind(gdm-password:auth): getting password (0x00000010)
May 10 19:30:44 mylnx00 pam: gdm-password: pam_winbind(gdm-password:auth): pam_get_item returned a password
May 10 19:30:44 mylnx00 pam: gdm-password: pam_winbind(gdm-password:auth): user 'domain\test02' granted access
May 10 19:30:44 mtlnx00 pam: gdm-password: pam_winbind(gdm-password:account): user 'DOMAIN\test02' granted access
May 10 19:30:45 mylnx00 pam: gdm-password: pam_unix(gdm-password:session): session opened for user DOMAIN\test02 by (uid=0)

In the faulty VM2 I do see the following on secure log, faulty because the desktop or gnome session is screwy after you log in as DOMAIN\test02 or test02
May 10 19:28:24 mylnx01 pam: gdm-password: pam_winbind(gdm-password:auth): getting password (0x00000010)
May 10 19:28:24 mylnx01 pam: gdm-password: pam_winbind(gdm-password:auth): pam_get_item returned a password
May 10 19:28:24 mylnx01 pam: gdm-password: pam_winbind(gdm-password:auth): user 'test02' granted access
May 10 19:28:24 mylnx01 pam: gdm-password: pam_winbind(gdm-password:account): user 'test02' granted access
May 10 19:28:24 mylnx01 pam: gdm-password: pam_unix(gdm-password:session): session opened for user test02 by (uid=0)

I would really appreciate your help, thanks.

Hi try comparing your:

On mylnx00 and mylnx01.

They look the same.
I did diff mylnx01_system-auth mylnx00_system-auth