Like mhiggins said you don't have to make the hard disks FAT32 for the windows machines to see them. In fact that makes them less efficient and secure. You should make them Linux native so you can use access permissions on them.
I administer a Windows XP professional network that uses a Linux server for DHCP, DNS, and an Internet Gateway and Firewall.
At my office workstation I have a Linux desktop and a Windows 98 desktop. Each machine has one shared folder, and the other machine can access no problem. Also, I have a printer connected to the Linux box that the Windows 98 machine prints to via the network.
I even have a Windows application installed via "wine (windows emulator-type program)" on my Linux machine, that I can run from my WIndows 98 box. (it doesn't run under Linux, but my Win98 box didn't have enough hard drive space).
You only need SAMBA to be set up for file and printer sharing (if you are going to store files/apps on the server.) Other than that, any other services like Web Server (HTTP), DNS, DHCP, Web proxy/filtering, can all be done with no special consideration of what Operating System your clients will be using (be it Windows XP, ME, 98, 2000, OS/2, Mac, Linux... etc.).
good luck
--A.
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