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If you can do it on Java that would be great; make sure you use configuration files so it's easy to reconfigure for other systems (solaris, winduhs, etc).
I'll check out the project web page but I doubt I'll have time to contribute. For me one of the most important things is making sure that calculations are done correctly (unlike Matlab which habitually gives you the wrong results assuming you don't care to have the correct result).
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