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I tried that but nothing else turned up not even when searching the entire root filesystem.
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That's weird. How many partitions do you have? inodes are specific to a filesystem. If you have more than one partition, you need to specify a path that is on the affected filesystem.
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Maybe one creates hardlinks and they were gotten rid of or something but the hard link count was not effected...
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Only if there's a bug in the filesystem driver.