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Sorry, I don't know the answer to your question*, but I will point out that the file ending with ~ is a before changes backup of the file being edited.
To see that, make a change to the file before you save and close, and you'll see that the ~ file is not the same as the later file.
Use
Code:
ls -ltr
to see that it's both newer and a different size than the file being edited.
*I'm sure there's some way to tell emacs to not make backups. Try searching for "control emacs backups"...or man emacs for more information.
Emacs by default saves the old version of the file with a "~" suffix. You can turn that feature off. The option is called "make-backup-files", and in the options groups it's in Files->Backup. Or, you can avoid digging through the "Customize Emacs" menus and just edit your ~/.emacs file and insert a line
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