I've been looking for a link to an article that I have read in the last two weeks about this exact question. I will give you what it said in my own words and maybe someone will recognise it.
Basically the reasoning behind calling the 64-bit packages 'AMD64' is that AMD where the first to have a retail 64-bit processor for the market. Similarly the 'x86' packages are sometimes called 'i386' as Intel released it...
It makes some sense to me... Why not.
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