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Any thoughts on what to check to determine the source of the problem?
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Open your box, then clean and reseat your memory sticks. Sometimes the least amount of oxidation, not detectable by the human eye, will cause memory stick problems. A light rubbing with a pencil eraser is sufficient to clean contacts.
You might want to check your BIOS settings for your RAM and bump the bus speed to one level slower. I had a box that would work fine for days and then suddenly would burp similar to what you describe. I changed the RAM speed to one level slower and never had a related problem thereafter. I noticed no performance hit.
Also, reseat all ribbon and device connectors.
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My problems usually occur after being in a X session for a period of time.
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Usually or always? After trying the above you then might want to focus on your
/etc/X11/xorg.conf and video driver. A lot of people have problems with certain video drivers. Browse the forum for more info. You could try using the generic VESA driver for several days to see what happens.
A challenge with troubleshooting is isolating the problem before trying to derive a solution. Consider temporarily disabling all possible services: networking, APM, CUPS, etc. Run with the bare bones possible. The less overhead you have running the easier to narrow the possible problems.
Hopefully some other people will pipe in to help.