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Old 10-22-2014, 07:55 AM   #1
JackFrost22901
LQ Newbie
 
Registered: Oct 2014
Posts: 2

Rep: Reputation: Disabled
Trouble installing netcdf


Hi all,

I'm trying to install netcdf libraries (v3.6.3), as I need them to be compiled with mcmodel=large to allow a simulation to run (simulation uses ifort, and currently gives 'relocation truncated to fit' errors ).

Now the method I post below used to work fine on my old computer, but now I'm on a different computer (using Red Hat, CentOS release 6.5 (Final)) I get error messages.

Basically I do the following:

Code:
export CC=icc 
export CXX=icpc 
export CFLAGS='-O1 -xT -ip -no-prec-div -mcmodel=large -shared-intel -traceback -static-intel' 
export CXXFLAGS='-O1 -xT -ip -no-prec-div -mcmodel=large -shared-intel -traceback -static-intel' 
export F77=ifort 
export FC=ifort
export F90=ifort
export FFLAGS='-O1 -xT -ip -no-prec-div -mcmodel=large -shared-intel -traceback -static-intel' 
export CPP='icc -E' 
export CXXCPP='icpc -E'

cd netcdf-3.6.3

./configure --enable-large-file-tests --prefix=my_path_to_netcdf --disable-cxx
make check
And then I get the following output (only copied in the last few lines with errors):
Code:
*** Creating fills.nc.
*** SUCCESS!
PASS: create_fills.sh

Fatal Error: This program was not built to run on the processor in your system.
The allowed processors are: Intel(R) Core(TM) Duo processors and compatible Intel processors with supplemental Streaming SIMD Extensions 3 (SSSE3) instruction support.

FAIL: nf_test

Fatal Error: This program was not built to run on the processor in your system.
The allowed processors are: Intel(R) Core(TM) Duo processors and compatible Intel processors with supplemental Streaming SIMD Extensions 3 (SSSE3) instruction support.

FAIL: tst_f77_v2

Fatal Error: This program was not built to run on the processor in your system.
The allowed processors are: Intel(R) Core(TM) Duo processors and compatible Intel processors with supplemental Streaming SIMD Extensions 3 (SSSE3) instruction support.

FAIL: ftest
 *** Testing netCDF-3 Fortran 90 API.
 *** SUCCESS!
PASS: tst_f90
=========================================
3 of 5 tests failed
Please report to support@unidata.ucar.edu
=========================================
I have tried replacing the -xT with other options (-xsse, -xsse2, -xssse3) but to no avail. The available flags are:

Code:
awk '/model name|flags/' /proc/cpuinfo | head -2

flags		: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nonstop_tsc extd_apicid amd_dcm aperfmperf pni pclmulqdq monitor ssse3 fma cx16 sse4_1 sse4_2 popcnt aes xsave avx f16c lahf_lm cmp_legacy svm extapic cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw ibs xop skinit wdt lwp fma4 tce nodeid_msr tbm topoext perfctr_core cpb npt lbrv svm_lock nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold bmi1
Can anyone offer any guidance? I really don't know what I'm doing with computers, so it's perhaps a surprise that I got it to work on my old computer at all!

Many thanks,

Liam
 
Old 10-22-2014, 11:16 AM   #2
JackFrost22901
LQ Newbie
 
Registered: Oct 2014
Posts: 2

Original Poster
Rep: Reputation: Disabled
I think the error lies in the fact that my old computer used Intel processors, while my new one uses AMD. Still not sure how I go about fixing it, or what specifically is the problem.
 
  


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