First of all, why are you using rsync when copying to the same machine? Have you tried moving using the mv or cp command? If your trying to preserve ownership of the files, mv by default retains this and cp has options to do this. Use mv if you want to just move, use cp if you want to copy the files to the new location so they will be in two locations.
And if your trying to perform a backup of your whole system, probably best to use tar and gzip to make a backup to move to another destination.
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