Ok, well I guess I solved this somewhat, the HARD way, commenting it out in the source code. It seems be tied to line 527 of 'wmadec.c', which means that it has to do with decoding Window$ media audio. Sure enough the audio of every file this happens on has something like 'Stream #0.0: Audio: wmav2, 44100 Hz, stereo, s16, 64 kb/s'.
Anyway, if someone knows a better way, please say so, otherwise I'll have to comment it out every time I compile mplayer.
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