I don't think you want to do this...
If you mean folders such as /etc, /usr, /var, /home, and so on, then you would cause great trouble by changing them to Uppercase. The Linux filesystem is case-sensitive. Filenames like 'FILE', 'File', 'FilE' and 'FIlE' are different in Linux. Changing the Linux filesystem filenames to uppercase would make the operating system commands unable to locate their files, which would break your system in a very fundamental way. I don't think you want to do this. Getting used to lower case names is easier.
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