not all DV AVIs created equal
Kino requires a DV AVI where there is a single frame interleaving between audio and video. Most DV AVIs are created that way. Depending upon the input, mencoder does not interleave audio in a way that Kino likes--one video frame's amount of audio samples per chunk. You can use ffmpeg to convert it to raw DV file without the lengthy re-encoding, but you will need a fair amount of disk (you probably already realize that):
ffmpeg -i the.avi -vcodec copy -acodec copy out.dv
I think that ffmpeg command will work, but I have not tried it.
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