How to install and run on Centos by system Crystallography & NMR System

TASI TSUNG YU · 01-24-2015, 02:13 AM

Originally can successfully run cns on Ubuntu,but after a change to Centos the csh command can not be executed.

What is wrong command or installation error can not be used? Thanks in advance.

unSpawn · 01-24-2015, 04:35 AM

If you are missing Csh:

Code:

 ~]$ ls -al /bin/csh
/bin/ls: cannot access "/bin/csh": No such file or directory

then install the package:

Code:

yum -y install csh

allend · 01-24-2015, 10:55 AM

Looking at the other thread, http://www.linuxquestions.org/questi...em-4175531984/ , apparently the OP is trying to run a specialist piece of scientific software. It is not my field, but I do recognise the terms. http://www.ncbi.nlm.nih.gov/pubmed/9757107
The software instructions seem to be here. http://www.msg.ucsf.edu/local/progra...ion/frame.html

TASI TSUNG YU · 01-25-2015, 08:37 PM

Quote:

Originally Posted by unSpawn

If you are missing Csh:

Code:

 ~]$ ls -al /bin/csh
/bin/ls: cannot access "/bin/csh": No such file or directory

then install the package:

Code:

yum -y install csh

I will try, thank you very much

TASI TSUNG YU · 01-25-2015, 08:40 PM

Quote:

Originally Posted by allend

Looking at the other thread, http://www.linuxquestions.org/questi...em-4175531984/ , apparently the OP is trying to run a specialist piece of scientific software. It is not my field, but I do recognise the terms. http://www.ncbi.nlm.nih.gov/pubmed/9757107
The software instructions seem to be here. http://www.msg.ucsf.edu/local/progra...ion/frame.html

I have read this page, but too much inside information, I do not know what i need

knudfl · 01-25-2015, 09:33 PM

CentOS :

There is no package 'csh' available for CentOS

/bin/csh is provided by the package tcsh :
# yum install tcsh

TASI TSUNG YU · 01-26-2015, 02:30 AM

csh problem has been solved, the instructions: csh -f

but I later re-install the cns in CentOS, the system displays:[environmental variable $CNS_SOLVE has been defined incorrectly]

Can someone teach me what is this meant?

unSpawn · 01-26-2015, 03:31 AM

Quote:

Originally Posted by TASI TSUNG YU

but I later re-install the cns in CentOS, the system displays:[environmental variable $CNS_SOLVE has been defined incorrectly]

In the http://www.msg.ucsf.edu/local/progra...ion/frame.html link allend posted, under the "Binary installation on Intel i686 and x86_64 architectures running Linux" header it literally reads:

Quote:

- edit the file cns_solve_env - change the line: setenv CNS_SOLVE 'location of CNSsolve directory'
- before using CNSsolve: source cns_solve_env

So please actually read the documentation and follow the instructions.

TASI TSUNG YU · 01-26-2015, 05:55 AM

Quote:

Originally Posted by unSpawn

In the http://www.msg.ucsf.edu/local/progra...ion/frame.html link allend posted, under the "Binary installation on Intel i686 and x86_64 architectures running Linux" header it literally reads:

So please actually read the documentation and follow the instructions.

Files which referred [CHANGE THE NEXT LINE TO POINT TO THE LOCATION OF THE CNSsolve DIRECTORY][setenv CNS_SOLVE _CNSsolve_location_]

Will I need to change the path, or the need to change the settings file inside?