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Old 08-23-2015, 09:12 AM   #1
hortageno
Member
 
Registered: Aug 2015
Distribution: Ubuntu 22.04 LTS
Posts: 240

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degraded raid due to pending sectors?


Hi all,

I'm trying to fix a degraded raid1 array (mdadm) on a Centos 5.10 server. It has 4 raid1 arrays

Code:
# cat /proc/mdstat 
Personalities : [raid1] 
md0 : active raid1 sda1[0] sdb1[1]
      104320 blocks [2/2] [UU]
      
md3 : active raid1 sdb3[1] sda3[0]
      2096384 blocks [2/2] [UU]
      
md2 : active raid1 sda5[0] sdb5[1]
      1930828096 blocks [2/2] [UU]
      
md1 : active raid1 sda2[2](F) sdb2[1]
      20482752 blocks [2/1] [_U]
      
unused devices: <none>
Yesterday I noticed that all arrays apart from md3 (used for swap) had their members from sda missing. So i started adding them with

#mdadm /dev/md0 --add /dev/sda1

and so on. This morning I checked whether it has finished resyncing and noticed that md1 has a faulty member sda2 (see above). I checked the syslog and found these entries

Code:
...
end_request: I/O error, dev sda, sector 36321768
...
end_request: I/O error, dev sda, sector 36321869
...
end_request: I/O error, dev sda, sector 36322168
...
end_request: I/O error, dev sda, sector 36319053
...
end_request: I/O error, dev sda, sector 36322253
...
end_request: I/O error, dev sda, sector 36318925
...
end_request: I/O error, dev sda, sector 36318752
...
end_request: I/O error, dev sda, sector 36318797
...
end_request: I/O error, dev sda, sector 36321741
...
end_request: I/O error, dev sda, sector 36322125
...
end_request: I/O error, dev sda, sector 36318669
...
If fdisk -lu /dev/sda1 uses the same sector numbering, then all those sectors are in /dev/sda2

Code:
# fdisk -lu /dev/sda

Disk /dev/sda: 2000.3 GB, 2000398934016 bytes
255 heads, 63 sectors/track, 243201 cylinders, total 3907029168 sectors
Units = sectors of 1 * 512 = 512 bytes

   Device Boot      Start         End      Blocks   Id  System
/dev/sda1   *          63      208844      104391   fd  Linux raid autodetect
/dev/sda2          208845    41174594    20482875   fd  Linux raid autodetect
/dev/sda3        41174595    45367559     2096482+  fd  Linux raid autodetect
/dev/sda4        45367560  3907024064  1930828252+   5  Extended
/dev/sda5        45367623  3907024064  1930828221   fd  Linux raid autodetect
I then started a long smart test, which seems to have aborted with 90% remaining due to a read failure

Code:
# smartctl -a /dev/sda
smartctl 5.42 2011-10-20 r3458 [i686-linux-2.6.18-238.12.1.el5] (local build)
Copyright (C) 2002-11 by Bruce Allen, http://smartmontools.sourceforge.net

=== START OF INFORMATION SECTION ===
Model Family:     SAMSUNG SpinPoint F4 EG (AFT)
Device Model:     SAMSUNG HD204UI
Serial Number:    S2H7JD2B226718
LU WWN Device Id: 5 0024e9 004b88df5
Firmware Version: 1AQ10001
User Capacity:    2,000,398,934,016 bytes [2.00 TB]
Sector Size:      512 bytes logical/physical
Device is:        In smartctl database [for details use: -P show]
ATA Version is:   8
ATA Standard is:  ATA-8-ACS revision 6
Local Time is:    Sun Aug 23 15:47:32 2015 CEST

==> WARNING: Using smartmontools or hdparm with this
drive may result in data loss due to a firmware bug.
****** THIS DRIVE MAY OR MAY NOT BE AFFECTED! ******
Buggy and fixed firmware report same version number!
See the following web pages for details:
http://www.samsung.com/global/business/hdd/faqView.do?b2b_bbs_msg_id=386
http://sourceforge.net/apps/trac/smartmontools/wiki/SamsungF4EGBadBlocks

SMART support is: Available - device has SMART capability.
SMART support is: Enabled

=== START OF READ SMART DATA SECTION ===
SMART overall-health self-assessment test result: PASSED

General SMART Values:
Offline data collection status:  (0x00) Offline data collection activity
                                        was never started.
                                        Auto Offline Data Collection: Disabled.
Self-test execution status:      ( 121) The previous self-test completed having
                                        the read element of the test failed.
Total time to complete Offline 
data collection:                (20400) seconds.
Offline data collection
capabilities:                    (0x5b) SMART execute Offline immediate.
                                        Auto Offline data collection on/off support.
                                        Suspend Offline collection upon new
                                        command.
                                        Offline surface scan supported.
                                        Self-test supported.
                                        No Conveyance Self-test supported.
                                        Selective Self-test supported.
SMART capabilities:            (0x0003) Saves SMART data before entering
                                        power-saving mode.
                                        Supports SMART auto save timer.
Error logging capability:        (0x01) Error logging supported.
                                        General Purpose Logging supported.
Short self-test routine 
recommended polling time:        (   2) minutes.
Extended self-test routine
recommended polling time:        ( 255) minutes.
SCT capabilities:              (0x003f) SCT Status supported.
                                        SCT Error Recovery Control supported.
                                        SCT Feature Control supported.
                                        SCT Data Table supported.

SMART Attributes Data Structure revision number: 16
Vendor Specific SMART Attributes with Thresholds:
ID# ATTRIBUTE_NAME          FLAG     VALUE WORST THRESH TYPE      UPDATED  WHEN_FAILED RAW_VALUE
  1 Raw_Read_Error_Rate     0x002f   100   100   051    Pre-fail  Always       -       145
  2 Throughput_Performance  0x0026   252   252   000    Old_age   Always       -       0
  3 Spin_Up_Time            0x0023   067   067   025    Pre-fail  Always       -       10056
  4 Start_Stop_Count        0x0032   100   100   000    Old_age   Always       -       42
  5 Reallocated_Sector_Ct   0x0033   252   252   010    Pre-fail  Always       -       0
  7 Seek_Error_Rate         0x002e   252   252   051    Old_age   Always       -       0
  8 Seek_Time_Performance   0x0024   252   252   015    Old_age   Offline      -       0
  9 Power_On_Hours          0x0032   100   100   000    Old_age   Always       -       35397
 10 Spin_Retry_Count        0x0032   252   252   051    Old_age   Always       -       0
 11 Calibration_Retry_Count 0x0032   252   252   000    Old_age   Always       -       0
 12 Power_Cycle_Count       0x0032   100   100   000    Old_age   Always       -       43
181 Program_Fail_Cnt_Total  0x0022   099   099   000    Old_age   Always       -       30601315
191 G-Sense_Error_Rate      0x0022   252   252   000    Old_age   Always       -       0
192 Power-Off_Retract_Count 0x0022   252   252   000    Old_age   Always       -       0
194 Temperature_Celsius     0x0002   064   048   000    Old_age   Always       -       28 (Min/Max 11/52)
195 Hardware_ECC_Recovered  0x003a   100   100   000    Old_age   Always       -       0
196 Reallocated_Event_Count 0x0032   252   252   000    Old_age   Always       -       0
197 Current_Pending_Sector  0x0032   100   100   000    Old_age   Always       -       2
198 Offline_Uncorrectable   0x0030   252   252   000    Old_age   Offline      -       0
199 UDMA_CRC_Error_Count    0x0036   098   098   000    Old_age   Always       -       1413
200 Multi_Zone_Error_Rate   0x002a   100   100   000    Old_age   Always       -       0
223 Load_Retry_Count        0x0032   252   252   000    Old_age   Always       -       0
225 Load_Cycle_Count        0x0032   100   100   000    Old_age   Always       -       43

SMART Error Log Version: 1
ATA Error Count: 104 (device log contains only the most recent five errors)
        CR = Command Register [HEX]
        FR = Features Register [HEX]
        SC = Sector Count Register [HEX]
        SN = Sector Number Register [HEX]
        CL = Cylinder Low Register [HEX]
        CH = Cylinder High Register [HEX]
        DH = Device/Head Register [HEX]
        DC = Device Command Register [HEX]
        ER = Error register [HEX]
        ST = Status register [HEX]
Powered_Up_Time is measured from power on, and printed as
DDd+hh:mm:SS.sss where DD=days, hh=hours, mm=minutes,
SS=sec, and sss=millisec. It "wraps" after 49.710 days.

Error 104 occurred at disk power-on lifetime: 11 hours (0 days + 11 hours)
  When the command that caused the error occurred, the device was active or idle.

  After command completion occurred, registers were:
  ER ST SC SN CL CH DH
  -- -- -- -- -- -- --
  84 51 01 fc 6f 03 e0  Error: ICRC, ABRT at LBA = 0x00036ffc = 225276

  Commands leading to the command that caused the error were:
  CR FR SC SN CL CH DH DC   Powered_Up_Time  Command/Feature_Name
  -- -- -- -- -- -- -- --  ----------------  --------------------
  ca 00 08 f5 6f 03 e0 08      00:00:01.070  WRITE DMA
  27 00 00 00 00 00 e0 08      00:00:01.070  READ NATIVE MAX ADDRESS EXT
  ec 00 00 00 00 00 a0 08      00:00:01.070  IDENTIFY DEVICE
  ef 03 42 00 00 00 a0 08      00:00:01.070  SET FEATURES [Set transfer mode]
  27 00 00 00 00 00 e0 08      00:00:01.070  READ NATIVE MAX ADDRESS EXT

Error 103 occurred at disk power-on lifetime: 11 hours (0 days + 11 hours)
  When the command that caused the error occurred, the device was active or idle.

  After command completion occurred, registers were:
  ER ST SC SN CL CH DH
  -- -- -- -- -- -- --
  84 51 01 fc 6f 03 e0  Error: ICRC, ABRT at LBA = 0x00036ffc = 225276

  Commands leading to the command that caused the error were:
  CR FR SC SN CL CH DH DC   Powered_Up_Time  Command/Feature_Name
  -- -- -- -- -- -- -- --  ----------------  --------------------
  ca 00 08 f5 6f 03 e0 08      00:00:01.070  WRITE DMA
  27 00 00 00 00 00 e0 08      00:00:01.070  READ NATIVE MAX ADDRESS EXT
  ec 00 00 00 00 00 a0 08      00:00:01.070  IDENTIFY DEVICE
  ef 03 42 00 00 00 a0 08      00:00:01.070  SET FEATURES [Set transfer mode]
  27 00 00 00 00 00 e0 08      00:00:01.070  READ NATIVE MAX ADDRESS EXT

Error 102 occurred at disk power-on lifetime: 11 hours (0 days + 11 hours)
  When the command that caused the error occurred, the device was active or idle.

  After command completion occurred, registers were:
  ER ST SC SN CL CH DH
  -- -- -- -- -- -- --
  84 51 01 fc 6f 03 e0  Error: ICRC, ABRT at LBA = 0x00036ffc = 225276

  Commands leading to the command that caused the error were:
  CR FR SC SN CL CH DH DC   Powered_Up_Time  Command/Feature_Name
  -- -- -- -- -- -- -- --  ----------------  --------------------
  ca 00 08 f5 6f 03 e0 08      00:00:01.069  WRITE DMA
  27 00 00 00 00 00 e0 08      00:00:01.069  READ NATIVE MAX ADDRESS EXT
  ec 00 00 00 00 00 a0 08      00:00:01.069  IDENTIFY DEVICE
  ef 03 42 00 00 00 a0 08      00:00:01.069  SET FEATURES [Set transfer mode]
  27 00 00 00 00 00 e0 08      00:00:01.069  READ NATIVE MAX ADDRESS EXT

Error 101 occurred at disk power-on lifetime: 11 hours (0 days + 11 hours)
  When the command that caused the error occurred, the device was active or idle.

  After command completion occurred, registers were:
  ER ST SC SN CL CH DH
  -- -- -- -- -- -- --
  84 51 01 fc 6f 03 e0  Error: ICRC, ABRT at LBA = 0x00036ffc = 225276

  Commands leading to the command that caused the error were:
  CR FR SC SN CL CH DH DC   Powered_Up_Time  Command/Feature_Name
  -- -- -- -- -- -- -- --  ----------------  --------------------
  ca 00 08 f5 6f 03 e0 08      00:00:01.069  WRITE DMA
  27 00 00 00 00 00 e0 08      00:00:01.069  READ NATIVE MAX ADDRESS EXT
  ec 00 00 00 00 00 a0 08      00:00:01.069  IDENTIFY DEVICE
  ef 03 42 00 00 00 a0 08      00:00:01.069  SET FEATURES [Set transfer mode]
  27 00 00 00 00 00 e0 08      00:00:01.069  READ NATIVE MAX ADDRESS EXT

Error 100 occurred at disk power-on lifetime: 11 hours (0 days + 11 hours)
  When the command that caused the error occurred, the device was active or idle.

  After command completion occurred, registers were:
  ER ST SC SN CL CH DH
  -- -- -- -- -- -- --
  84 51 01 fc 6f 03 e0  Error: ICRC, ABRT at LBA = 0x00036ffc = 225276

  Commands leading to the command that caused the error were:
  CR FR SC SN CL CH DH DC   Powered_Up_Time  Command/Feature_Name
  -- -- -- -- -- -- -- --  ----------------  --------------------
  ca 00 08 f5 6f 03 e0 08      00:00:01.069  WRITE DMA
  27 00 00 00 00 00 e0 08      00:00:01.069  READ NATIVE MAX ADDRESS EXT
  ec 00 00 00 00 00 a0 08      00:00:01.069  IDENTIFY DEVICE
  ef 03 42 00 00 00 a0 08      00:00:01.069  SET FEATURES [Set transfer mode]
  27 00 00 00 00 00 e0 08      00:00:01.069  READ NATIVE MAX ADDRESS EXT

SMART Self-test log structure revision number 1
Num  Test_Description    Status                  Remaining  LifeTime(hours)  LBA_of_first_error
# 1  Extended offline    Completed: read failure       90%     35393         36318760

Note: selective self-test log revision number (0) not 1 implies that no selective self-test has ever been run
SMART Selective self-test log data structure revision number 0
Note: revision number not 1 implies that no selective self-test has ever been run
 SPAN  MIN_LBA  MAX_LBA  CURRENT_TEST_STATUS
    1        0        0  Completed_read_failure [90% left] (0-65535)
    2        0        0  Not_testing
    3        0        0  Not_testing
    4        0        0  Not_testing
    5        0        0  Not_testing
Selective self-test flags (0x0):
  After scanning selected spans, do NOT read-scan remainder of disk.
If Selective self-test is pending on power-up, resume after 0 minute delay.
I don't understand why there are 0 reallocated sectors and 0 offline uncorrectable sectors, but only 2 pending sectors. Is it because smartctl didn't finish?

So, now my plan is to remove sda2 from md1 and fill it with zeros

dd if=/dev/zero of=/dev/sda2

in the hope that all pending sectors get reallocated and then re-add sda2 to md1. Does this sound ok, or are there any pitfalls I didn't think of yet?

The problem is, I'm not on-site, I'm not even in the same country at the moment and there is only a Windows support guy on-site with basically no Linux knowledge. If everything fails, I guess I have to get him to buy a new hard disk and replace the failing one.
 
Old 08-23-2015, 09:30 AM   #2
smallpond
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Registered: Feb 2011
Location: Massachusetts, USA
Distribution: Fedora
Posts: 4,138

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I would suggest that you first check the system sensors for some other problem that may be causing drive failures - like a bad power supply, overheat or stopped fans. Second make sure you have any important data backed up. Third replace the drive and get back to a protected state. Last, try to recover the drive as a hobby project.
 
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