I was uploading my new .war file used for my web application,through the tomcat manager.

I went around the same process by
1st) Stopping the application;
2nd) Undeploying it,
3rd) Deploying the new war file
and finally,
4th) restarting tomcat by /etc/rc.d/init.d/tomcat5 restart


after which I got lot of errors:

# /etc/init.d/tomcat5 restart

shell-init: error retrieving current directory: getcwd: cannot access parent directories:
No existe el fichero o el directorio
stopping tomcat5: [ OK ]
Iniciando tomcat5: shell-init: error retrieving current directory: getcwd: cannot access parent
directories: File or directory doesn't exists.
shell-init: error retrieving current directory: getcwd: cannot access parent directories:
File or directory doesn't exists.
pushd: error retrieving current directory: getcwd: cannot access parent directories: File
or directory doesn't exists.
/bin/ln: creating symbolic link �[commons-collections-tomcat5].jar�: File or directory doesn't
exists.
/bin/ln: creating symbolic link �[commons-dbcp-tomcat5].jar�: File or directory doesn't exists.
/bin/ln: creating symbolic link �[commons-el].jar�: File or directory doesn't exists.
/bin/ln: creating symbolic link �[commons-pool-tomcat5].jar�: File or directory doesn't exists.
/bin/ln: creating symbolic link �[ecj].jar�: File or directory doesn't exists.
/bin/ln: creating symbolic link �[jaf].jar�: File or directory doesn't exists.
/bin/ln: creating symbolic link �[jasper5-compiler].jar�: File or directory doesn't exists.
/bin/ln: creating symbolic link �[jasper5-runtime].jar�: File or directory doesn't exists.
/bin/ln: creating symbolic link �[javamail].jar�: File or directory doesn't exists.
/bin/ln: creating symbolic link �[jsp].jar�: File or directory doesn't exists.
/bin/ln: creating symbolic link �[servlet].jar�: File or directory doesn't exists.
/bin/ln: creating symbolic link �[tomcat5][naming-factory].jar�: File or directory doesn't
exists.
/bin/ln: creating symbolic link �[tomcat5][naming-resources].jar�: File or directory doesn't
exists.
/usr/share/java-utils/java-functions: line 247: popd: directory stack empty
shell-init: error retrieving current directory: getcwd: cannot access parent directories:
File or directory doesn't exists.
pushd: error retrieving current directory: getcwd: cannot access parent directories: File
or directory doesn't exists.
/bin/ln: creating symbolic link �[jaxp_parser_impl].jar�: File or directory doesn't exists.
/bin/ln: creating symbolic link �[xml-commons-jaxp-1.3-apis].jar�: File or directory doesn't
exists.
/usr/share/java-utils/java-functions: line 247: popd: directory stack empty
shell-init: error retrieving current directory: getcwd: cannot access parent directories:
File or directory doesn't exists.
pushd: error retrieving current directory: getcwd: cannot access parent directories: File
or directory doesn't exists.
/bin/ln: creating symbolic link �[catalina-ant5].jar�: File or directory doesn't exists....
...
/usr/share/java-utils/java-functions: line 247: popd: directory stack empty


I am using tomcat5 from standard centos 5.2 and gcc java 1.4.2 again provided by centos 5.2

To get it running i had to remove java and tomcat and again reinstall it.

This has happened twice in 2 days,i cannot keep on reinstalling and configuring java and tomcat everytime as it consumes a lot of time,
Please shed some light on this and help me out of this.

One thing i had done was i was inside the tomcat folder via ssh
i.e /usr/share/tomcat5/webapps folder while undeploying and deploying the application.
Thanks in advance.