atomic.h missing/can't be found??? (glibc/kernel problem?)

abefroman · 03-12-2011, 07:56 AM

When I'm recompiling apache and php, it doesn't go through and I get this error:

Code:

checking for atomic.h... no
/usr/include/mysql/my_global.h:364:24: error: asm/atomic.h: No such file or directory

That file is there though:

Code:

/usr/src/kernels/2.6.18-194.32.1.el5-x86_64/include/asm-generic/atomic.h
/usr/src/kernels/2.6.18-194.32.1.el5-x86_64/include/asm-generic/bitops/atomic.h
/usr/src/kernels/2.6.18-194.32.1.el5-x86_64/include/asm-generic/bitops/ext2-atomic.h
/usr/src/kernels/2.6.18-194.32.1.el5-x86_64/include/asm-generic/bitops/ext2-non-atomic.h
/usr/src/kernels/2.6.18-194.32.1.el5-x86_64/include/asm-generic/bitops/non-atomic.h
/usr/src/kernels/2.6.18-194.32.1.el5-x86_64/include/asm-i386/atomic.h
/usr/src/kernels/2.6.18-194.32.1.el5-x86_64/include/asm-x86_64/atomic.h

Someone mentioned the glibc headers might be corrupt, I forced a reinstall of glibc, glibc-common, glibc-devel, and glibc-headers, but I'm still getting that error.

Also I tried booting with a different kernel.

Any ideas?

TIA

corp769 · 03-12-2011, 10:47 AM

Your include directory for compiling should be /usr/include. Try looking in there. If it is not, you could always symlink to the appropriate file.

knudfl · 03-12-2011, 11:16 AM

What is the the version of libmysqlclient-dev ? ( libmysqlclient15-dev ).
The header my_global.h from libmysqlclient-dev is not supposed to ask
for a header, that is not present in /usr/include/asm/ .

Also : Which versions of apache and php are you trying to build ?

Ubuntu uses patches, that takes care of such situations. Examples :
apache2 http://packages.ubuntu.com/natty/apache2
> > [apache2_2.2.17-1ubuntu1.diff.gz]

php5 http://packages.ubuntu.com/natty/php5
> > [php5_5.3.5-1ubuntu2.diff.gz]

..

knudfl · 03-13-2011, 05:47 AM

Sorry, CentOS 5.5 : The patching can be found in the SRC.RPMS.
http://mirror.centos.org/centos/5.5/updates/SRPMS/
httpd-2.2.3-43.el5.centos.3.src.rpm php-5.1.6-27.el5_5.3.src.rpm

Later versions : All Fedora php can be used : rpmbuild -bb php.spec
Examples, posts # 4 (# 5) here
http://www.linuxquestions.org/questi...-5-2-a-791943/
http://www.linuxquestions.org/questi...-0-a-764323/#3

'httpd' (apache) The Fedora SRC.RPMS can probably also be used ..
http://www.linuxquestions.org/questi...-5-a-790431/#5
http://www.linuxquestions.org/questi...-3-a-755016/#9
http://www.jasonlitka.com/ > http://www.jasonlitka.com/media/EL5/
http://www.jasonlitka.com/media/SRPMS/

abefroman · 03-13-2011, 01:30 PM

Thanks!

Yep, its CentOS 5.5

abefroman · 03-13-2011, 01:31 PM

Also it can be fixed by opening:
/usr/include/mysql/my_global.h
and commenting out this line:
#include <asm/atomic.h>