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shanisi 05-19-2011 05:14 PM
Lammps 7may11 on ubuntu 11.04 !!!
 
Dear all

I am unable to install Lammps 7may11 on ubuntu 11.04. After spending a lot of time on it I conclude that I need a "LIONHEART". Is there any????

arizonagroovejet 05-20-2011 12:23 PM
I think if you want help you're going to have to provide a better description of your problem.

Can you explain what 'Lammps 7may11' is? Posting a link to a relevant website might help. (Is it this http://lammps.sandia.gov/ ?)

I have no idea what a 'LIONHEART' is.

shanisi 05-20-2011 03:48 PM
Dear
Actually I am new on ubuntu, more accurately on Linux. I didn't found any easy way to install this specific version of lammps i.e. 7may11 on ubuntu 11.04. I found lot of methods but those methods are related to old versions of lammps on old versions of ubuntu. I have applied almost all but useless.
nowwwwwww?????

TB0ne 05-20-2011 04:14 PM
Quote:
Originally Posted by shanisi (Post 4362258)
Dear
Actually I am new on ubuntu, more accurately on Linux. I didn't found any easy way to install this specific version of lammps i.e. 7may11 on ubuntu 11.04. I found lot of methods but those methods are related to old versions of lammps on old versions of ubuntu. I have applied almost all but useless.
nowwwwwww?????
Again, we don't know what you're talking about. "Lammps 7may11" means nothing, nor does lionheart. Was the link arizonagroovejet provided the link to your project?

And how about providing some actual DETAILS? Things like what error(s) you're seeing, when, and what you're doing to generate them. Just saying you have "applied almost all but useless", tells us nothing. And the "nowwwwwwww????" doesn't make people want to answer you quicker.....

shanisi 05-23-2011 08:24 AM
First of all I try this:

niaz@shanisi:~$ cd /opt/lammps-7May11/src/
niaz@shanisi:/opt/lammps-7May11/src$ make linux
mkdir: cannot create directory `Obj_linux': Permission denied
make: *** [linux] Error 1

Thenn with sudo:

niaz@shanisi:/opt/lammps-7May11/src$ sudo make linux
[sudo] password for niaz:
make[1]: Entering directory `/opt/lammps-7May11/src/Obj_linux'
Makefile:104: angle_charmm.d: No such file or directory
Makefile:104: angle_class2.d: No such file or directory
Makefile:104: angle_cosine.d: No such file or directory
Makefile:104: angle_cosine_delta.d: No such file or directory
Makefile:104: angle_cosine_periodic.d: No such file or directory
Makefile:104: angle_cosine_squared.d: No such file or directory
Makefile:104: angle.d: No such file or directory
Makefile:104: angle_harmonic.d: No such file or directory
Makefile:104: angle_hybrid.d: No such file or directory
Makefile:104: angle_table.d: No such file or directory
Makefile:104: atom.d: No such file or directory
Makefile:104: atom_vec_angle.d: No such file or directory
Makefile:104: atom_vec_atomic.d: No such file or directory
Makefile:104: atom_vec_bond.d: No such file or directory
Makefile:104: atom_vec_charge.d: No such file or directory
Makefile:104: atom_vec.d: No such file or directory
Makefile:104: atom_vec_dipole.d: No such file or directory
Makefile:104: atom_vec_ellipsoid.d: No such file or directory
Makefile:104: atom_vec_full.d: No such file or directory
Makefile:104: atom_vec_hybrid.d: No such file or directory
Makefile:104: atom_vec_molecular.d: No such file or directory
Makefile:104: atom_vec_peri.d: No such file or directory
Makefile:104: atom_vec_sphere.d: No such file or directory
Makefile:104: bond_class2.d: No such file or directory
Makefile:104: bond.d: No such file or directory
Makefile:104: bond_fene.d: No such file or directory
Makefile:104: bond_fene_expand.d: No such file or directory
Makefile:104: bond_harmonic.d: No such file or directory
Makefile:104: bond_hybrid.d: No such file or directory
Makefile:104: bond_morse.d: No such file or directory
Makefile:104: bond_nonlinear.d: No such file or directory
Makefile:104: bond_quartic.d: No such file or directory
Makefile:104: bond_table.d: No such file or directory
Makefile:104: change_box.d: No such file or directory
Makefile:104: comm.d: No such file or directory
Makefile:104: compute_angle_local.d: No such file or directory
Makefile:104: compute_atom_molecule.d: No such file or directory
Makefile:104: compute_bond_local.d: No such file or directory
Makefile:104: compute_centro_atom.d: No such file or directory
Makefile:104: compute_cluster_atom.d: No such file or directory
Makefile:104: compute_cna_atom.d: No such file or directory
Makefile:104: compute_com.d: No such file or directory
Makefile:104: compute_com_molecule.d: No such file or directory
Makefile:104: compute_coord_atom.d: No such file or directory
Makefile:104: compute.d: No such file or directory
Makefile:104: compute_damage_atom.d: No such file or directory
Makefile:104: compute_dihedral_local.d: No such file or directory
Makefile:104: compute_displace_atom.d: No such file or directory
Makefile:104: compute_erotate_asphere.d: No such file or directory
Makefile:104: compute_erotate_sphere.d: No such file or directory
Makefile:104: compute_event_displace.d: No such file or directory
Makefile:104: compute_group_group.d: No such file or directory
Makefile:104: compute_gyration.d: No such file or directory
Makefile:104: compute_gyration_molecule.d: No such file or directory
Makefile:104: compute_heat_flux.d: No such file or directory
Makefile:104: compute_improper_local.d: No such file or directory
Makefile:104: compute_ke_atom.d: No such file or directory
Makefile:104: compute_ke.d: No such file or directory
Makefile:104: compute_msd.d: No such file or directory
Makefile:104: compute_msd_molecule.d: No such file or directory
Makefile:104: compute_pair.d: No such file or directory
Makefile:104: compute_pair_local.d: No such file or directory
Makefile:104: compute_pe_atom.d: No such file or directory
Makefile:104: compute_pe.d: No such file or directory
Makefile:104: compute_pressure.d: No such file or directory
Makefile:104: compute_property_atom.d: No such file or directory
Makefile:104: compute_property_local.d: No such file or directory
Makefile:104: compute_property_molecule.d: No such file or directory
Makefile:104: compute_rdf.d: No such file or directory
Makefile:104: compute_reduce.d: No such file or directory
Makefile:104: compute_reduce_region.d: No such file or directory
Makefile:104: compute_stress_atom.d: No such file or directory
Makefile:104: compute_temp_asphere.d: No such file or directory
Makefile:104: compute_temp_com.d: No such file or directory
Makefile:104: compute_temp.d: No such file or directory
Makefile:104: compute_temp_deform.d: No such file or directory
Makefile:104: compute_temp_partial.d: No such file or directory
Makefile:104: compute_temp_profile.d: No such file or directory
Makefile:104: compute_temp_ramp.d: No such file or directory
Makefile:104: compute_temp_region.d: No such file or directory
Makefile:104: compute_temp_sphere.d: No such file or directory
Makefile:104: compute_ti.d: No such file or directory
Makefile:104: create_atoms.d: No such file or directory
Makefile:104: create_box.d: No such file or directory
Makefile:104: delete_atoms.d: No such file or directory
Makefile:104: delete_bonds.d: No such file or directory
Makefile:104: dihedral_charmm.d: No such file or directory
Makefile:104: dihedral_class2.d: No such file or directory
Makefile:104: dihedral.d: No such file or directory
Makefile:104: dihedral_harmonic.d: No such file or directory
Makefile:104: dihedral_helix.d: No such file or directory
Makefile:104: dihedral_hybrid.d: No such file or directory
Makefile:104: dihedral_multi_harmonic.d: No such file or directory
Makefile:104: dihedral_opls.d: No such file or directory
Makefile:104: displace_atoms.d: No such file or directory
Makefile:104: displace_box.d: No such file or directory
Makefile:104: domain.d: No such file or directory
Makefile:104: dump_atom.d: No such file or directory
Makefile:104: dump_cfg.d: No such file or directory
Makefile:104: dump.d: No such file or directory
Makefile:104: dump_custom.d: No such file or directory
Makefile:104: dump_dcd.d: No such file or directory
Makefile:104: dump_local.d: No such file or directory
Makefile:104: dump_xtc.d: No such file or directory
Makefile:104: dump_xyz.d: No such file or directory
Makefile:104: error.d: No such file or directory
Makefile:104: ewald.d: No such file or directory
Makefile:104: fft3d.d: No such file or directory
Makefile:104: fft3d_wrap.d: No such file or directory
Makefile:104: finish.d: No such file or directory
Makefile:104: fix_adapt.d: No such file or directory
Makefile:104: fix_addforce.d: No such file or directory
Makefile:104: fix_ave_atom.d: No such file or directory
Makefile:104: fix_ave_correlate.d: No such file or directory
Makefile:104: fix_aveforce.d: No such file or directory
Makefile:104: fix_ave_histo.d: No such file or directory
Makefile:104: fix_ave_spatial.d: No such file or directory
Makefile:104: fix_ave_time.d: No such file or directory
Makefile:104: fix_bond_break.d: No such file or directory
Makefile:104: fix_bond_create.d: No such file or directory
Makefile:104: fix_bond_swap.d: No such file or directory
Makefile:104: fix_box_relax.d: No such file or directory
Makefile:104: fix.d: No such file or directory
Makefile:104: fix_deform.d: No such file or directory
Makefile:104: fix_deposit.d: No such file or directory
Makefile:104: fix_drag.d: No such file or directory
Makefile:104: fix_dt_reset.d: No such file or directory
Makefile:104: fix_efield.d: No such file or directory
Makefile:104: fix_enforce2d.d: No such file or directory
Makefile:104: fix_evaporate.d: No such file or directory
Makefile:104: fix_event.d: No such file or directory
Makefile:104: fix_event_prd.d: No such file or directory
Makefile:104: fix_event_tad.d: No such file or directory
Makefile:104: fix_external.d: No such file or directory
Makefile:104: fix_freeze.d: No such file or directory
Makefile:104: fix_gpu.d: No such file or directory
Makefile:104: fix_gravity.d: No such file or directory
Makefile:104: fix_heat.d: No such file or directory
Makefile:104: fix_indent.d: No such file or directory
Makefile:104: fix_langevin.d: No such file or directory
Makefile:104: fix_lineforce.d: No such file or directory
Makefile:104: fix_minimize.d: No such file or directory
Makefile:104: fix_momentum.d: No such file or directory
Makefile:104: fix_move.d: No such file or directory
Makefile:104: fix_msst.d: No such file or directory
Makefile:104: fix_neb.d: No such file or directory
Makefile:104: fix_nh_asphere.d: No such file or directory
Makefile:104: fix_nh.d: No such file or directory
Makefile:104: fix_nh_sphere.d: No such file or directory
Makefile:104: fix_nph_asphere.d: No such file or directory
Makefile:104: fix_nph.d: No such file or directory
Makefile:104: fix_nph_sphere.d: No such file or directory
Makefile:104: fix_npt_asphere.d: No such file or directory
Makefile:104: fix_npt.d: No such file or directory
Makefile:104: fix_npt_sphere.d: No such file or directory
Makefile:104: fix_nve_asphere.d: No such file or directory
Makefile:104: fix_nve.d: No such file or directory
Makefile:104: fix_nve_limit.d: No such file or directory
Makefile:104: fix_nve_noforce.d: No such file or directory
Makefile:104: fix_nve_sphere.d: No such file or directory
Makefile:104: fix_nvt_asphere.d: No such file or directory
Makefile:104: fix_nvt.d: No such file or directory
Makefile:104: fix_nvt_sllod.d: No such file or directory
Makefile:104: fix_nvt_sphere.d: No such file or directory
Makefile:104: fix_orient_fcc.d: No such file or directory
Makefile:104: fix_peri_neigh.d: No such file or directory
Makefile:104: fix_planeforce.d: No such file or directory
Makefile:104: fix_poems.d: No such file or directory
Makefile:104: fix_pour.d: No such file or directory
Makefile:104: fix_press_berendsen.d: No such file or directory
Makefile:104: fix_print.d: No such file or directory
Makefile:104: fix_qeq_comb.d: No such file or directory
Makefile:104: fix_read_restart.d: No such file or directory
Makefile:104: fix_reax_bonds.d: No such file or directory
Makefile:104: fix_recenter.d: No such file or directory
Makefile:104: fix_respa.d: No such file or directory
Makefile:104: fix_rigid.d: No such file or directory
Makefile:104: fix_rigid_nve.d: No such file or directory
Makefile:104: fix_rigid_nvt.d: No such file or directory
Makefile:104: fix_setforce.d: No such file or directory
Makefile:104: fix_shake.d: No such file or directory
Makefile:104: fix_shear_history.d: No such file or directory
Makefile:104: fix_spring.d: No such file or directory
Makefile:104: fix_spring_rg.d: No such file or directory
Makefile:104: fix_spring_self.d: No such file or directory
Makefile:104: fix_store_force.d: No such file or directory
Makefile:104: fix_store_state.d: No such file or directory
Makefile:104: fix_temp_berendsen.d: No such file or directory
Makefile:104: fix_temp_rescale.d: No such file or directory
Makefile:104: fix_thermal_conductivity.d: No such file or directory
Makefile:104: fix_tmd.d: No such file or directory
Makefile:104: fix_ttm.d: No such file or directory
Makefile:104: fix_viscosity.d: No such file or directory
Makefile:104: fix_viscous.d: No such file or directory
Makefile:104: fix_wall_colloid.d: No such file or directory
Makefile:104: fix_wall.d: No such file or directory
Makefile:104: fix_wall_gran.d: No such file or directory
Makefile:104: fix_wall_harmonic.d: No such file or directory
Makefile:104: fix_wall_lj126.d: No such file or directory
Makefile:104: fix_wall_lj93.d: No such file or directory
Makefile:104: fix_wall_reflect.d: No such file or directory
Makefile:104: fix_wall_region.d: No such file or directory
Makefile:104: force.d: No such file or directory
Makefile:104: group.d: No such file or directory
Makefile:104: improper_class2.d: No such file or directory
Makefile:104: improper.d: No such file or directory
Makefile:104: improper_cvff.d: No such file or directory
Makefile:104: improper_harmonic.d: No such file or directory
Makefile:104: improper_hybrid.d: No such file or directory
Makefile:104: improper_umbrella.d: No such file or directory
Makefile:104: input.d: No such file or directory
Makefile:104: integrate.d: No such file or directory
Makefile:104: irregular.d: No such file or directory
Makefile:104: kspace.d: No such file or directory
Makefile:104: lammps.d: No such file or directory
Makefile:104: lattice.d: No such file or directory
Makefile:104: library.d: No such file or directory
Makefile:104: main.d: No such file or directory
Makefile:104: math_extra.d: No such file or directory
Makefile:104: memory.d: No such file or directory
Makefile:104: min_cg.d: No such file or directory
Makefile:104: min.d: No such file or directory
Makefile:104: min_fire.d: No such file or directory
Makefile:104: min_hftn.d: No such file or directory
Makefile:104: minimize.d: No such file or directory
Makefile:104: min_linesearch.d: No such file or directory
Makefile:104: min_quickmin.d: No such file or directory
Makefile:104: min_sd.d: No such file or directory
Makefile:104: modify.d: No such file or directory
Makefile:104: neb.d: No such file or directory
Makefile:104: neigh_bond.d: No such file or directory
Makefile:104: neighbor.d: No such file or directory
Makefile:104: neigh_derive.d: No such file or directory
Makefile:104: neigh_full.d: No such file or directory
Makefile:104: neigh_gran.d: No such file or directory
Makefile:104: neigh_half_bin.d: No such file or directory
Makefile:104: neigh_half_multi.d: No such file or directory
Makefile:104: neigh_half_nsq.d: No such file or directory
Makefile:104: neigh_list.d: No such file or directory
Makefile:104: neigh_request.d: No such file or directory
Makefile:104: neigh_respa.d: No such file or directory
Makefile:104: neigh_stencil.d: No such file or directory
Makefile:104: output.d: No such file or directory
Makefile:104: pack.d: No such file or directory
Makefile:104: pair_airebo.d: No such file or directory
Makefile:104: pair_born_coul_long.d: No such file or directory
Makefile:104: pair_born.d: No such file or directory
Makefile:104: pair_buck_coul_cut.d: No such file or directory
Makefile:104: pair_buck_coul_long.d: No such file or directory
Makefile:104: pair_buck.d: No such file or directory
Makefile:104: pair_colloid.d: No such file or directory
Makefile:104: pair_comb.d: No such file or directory
Makefile:104: pair_coul_cut.d: No such file or directory
Makefile:104: pair_coul_debye.d: No such file or directory
Makefile:104: pair_coul_long.d: No such file or directory
Makefile:104: pair.d: No such file or directory
Makefile:104: pair_dipole_cut.d: No such file or directory
Makefile:104: pair_dpd.d: No such file or directory
Makefile:104: pair_dpd_tstat.d: No such file or directory
Makefile:104: pair_dsmc.d: No such file or directory
Makefile:104: pair_eam_alloy.d: No such file or directory
Makefile:104: pair_eam_alloy_opt.d: No such file or directory
Makefile:104: pair_eam.d: No such file or directory
Makefile:104: pair_eam_fs.d: No such file or directory
Makefile:104: pair_eam_fs_opt.d: No such file or directory
Makefile:104: pair_eam_opt.d: No such file or directory
Makefile:104: pair_eim.d: No such file or directory
Makefile:104: pair_gauss.d: No such file or directory
Makefile:104: pair_gayberne.d: No such file or directory
Makefile:104: pair_gayberne_gpu.d: No such file or directory
Makefile:104: pair_gran_hertz_history.d: No such file or directory
Makefile:104: pair_gran_hooke.d: No such file or directory
Makefile:104: pair_gran_hooke_history.d: No such file or directory
Makefile:104: pair_hbond_dreiding_lj.d: No such file or directory
Makefile:104: pair_hbond_dreiding_morse.d: No such file or directory
Makefile:104: pair_hybrid.d: No such file or directory
Makefile:104: pair_hybrid_overlay.d: No such file or directory
Makefile:104: pair_lj96_cut.d: No such file or directory
Makefile:104: pair_lj96_cut_gpu.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_charmm.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_charmm_implicit.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_long.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_long_gpu.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_long_opt.d: No such file or directory
Makefile:104: pair_lj_class2_coul_cut.d: No such file or directory
Makefile:104: pair_lj_class2_coul_long.d: No such file or directory
Makefile:104: pair_lj_class2.d: No such file or directory
Makefile:104: pair_lj_cut_coul_cut.d: No such file or directory
Makefile:104: pair_lj_cut_coul_cut_gpu.d: No such file or directory
Makefile:104: pair_lj_cut_coul_debye.d: No such file or directory
Makefile:104: pair_lj_cut_coul_long.d: No such file or directory
Makefile:104: pair_lj_cut_coul_long_gpu.d: No such file or directory
Makefile:104: pair_lj_cut_coul_long_tip4p.d: No such file or directory
Makefile:104: pair_lj_cut.d: No such file or directory
Makefile:104: pair_lj_cut_gpu.d: No such file or directory
Makefile:104: pair_lj_cut_opt.d: No such file or directory
Makefile:104: pair_lj_expand.d: No such file or directory
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Makefile:104: pair_lj_gromacs_coul_gromacs.d: No such file or directory
Makefile:104: pair_lj_gromacs.d: No such file or directory
Makefile:104: pair_lj_smooth.d: No such file or directory
Makefile:104: pair_lubricate.d: No such file or directory
Makefile:104: pair_meam.d: No such file or directory
Makefile:104: pair_morse.d: No such file or directory
Makefile:104: pair_morse_gpu.d: No such file or directory
Makefile:104: pair_morse_opt.d: No such file or directory
Makefile:104: pair_peri_lps.d: No such file or directory
Makefile:104: pair_peri_pmb.d: No such file or directory
Makefile:104: pair_reax.d: No such file or directory
Makefile:104: pair_resquared.d: No such file or directory
Makefile:104: pair_soft.d: No such file or directory
Makefile:104: pair_sw.d: No such file or directory
Makefile:104: pair_table.d: No such file or directory
Makefile:104: pair_tersoff.d: No such file or directory
Makefile:104: pair_tersoff_zbl.d: No such file or directory
Makefile:104: pair_yukawa_colloid.d: No such file or directory
Makefile:104: pair_yukawa.d: No such file or directory
Makefile:104: pppm.d: No such file or directory
Makefile:104: pppm_gpu.d: No such file or directory
Makefile:104: pppm_gpu_double.d: No such file or directory
Makefile:104: pppm_gpu_single.d: No such file or directory
Makefile:104: pppm_tip4p.d: No such file or directory
Makefile:104: prd.d: No such file or directory
Makefile:104: random_mars.d: No such file or directory
Makefile:104: random_park.d: No such file or directory
Makefile:104: read_data.d: No such file or directory
Makefile:104: read_restart.d: No such file or directory
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Makefile:104: region_cone.d: No such file or directory
Makefile:104: region.d: No such file or directory
Makefile:104: region_cylinder.d: No such file or directory
Makefile:104: region_intersect.d: No such file or directory
Makefile:104: region_plane.d: No such file or directory
Makefile:104: region_prism.d: No such file or directory
Makefile:104: region_sphere.d: No such file or directory
Makefile:104: region_union.d: No such file or directory
Makefile:104: remap.d: No such file or directory
Makefile:104: remap_wrap.d: No such file or directory
Makefile:104: replicate.d: No such file or directory
Makefile:104: respa.d: No such file or directory
Makefile:104: run.d: No such file or directory
Makefile:104: set.d: No such file or directory
Makefile:104: special.d: No such file or directory
Makefile:104: tad.d: No such file or directory
Makefile:104: temper.d: No such file or directory
Makefile:104: thermo.d: No such file or directory
Makefile:104: timer.d: No such file or directory
Makefile:104: universe.d: No such file or directory
Makefile:104: update.d: No such file or directory
Makefile:104: variable.d: No such file or directory
Makefile:104: velocity.d: No such file or directory
Makefile:104: verlet.d: No such file or directory
Makefile:104: write_restart.d: No such file or directory
Makefile:104: xdr_compat.d: No such file or directory
mpiicc -O -DLAMMPS_GZIP -I../../lib/reax -I../../lib/poems -I../../lib/meam -DMPICH_SKIP_MPICXX -I/usr/local/fft -DFFT_FFTW -M xdr_compat.cpp > xdr_compat.d
/bin/sh: mpiicc: not found
make[1]: *** [xdr_compat.d] Error 127
make[1]: Leaving directory `/opt/lammps-7May11/src/Obj_linux'
make: *** [linux] Error 2
niaz@shanisi:/opt/lammps-7May11/src$

arizonagroovejet 05-23-2011 08:32 AM
Usually source bundles have a file inside called README or INSTALL or something similar to that which contain instructions on how to compile and install the software. Did you look for such a file and if so are you following what it says?

You still haven't confirmed whether or not the software I linked to is what you're trying to install. Is it or isn't it? (And if it isn't, post a link to what you are trying to install.)


Please wrap commands and any output from them in CODE tags.

TB0ne 05-23-2011 09:04 AM
Quote:
Originally Posted by shanisi (Post 4364541)
First of all I try this:

niaz@shanisi:~$ cd /opt/lammps-7May11/src/
niaz@shanisi:/opt/lammps-7May11/src$ make linux
mkdir: cannot create directory `Obj_linux': Permission denied
make: *** [linux] Error 1

Thenn with sudo:
Great. Now if you answered any of the other questions we've asked you, perhaps we could help.

shanisi 05-23-2011 09:07 AM
I am trying to install lammps which is a molecular dynamics package. According to their instructions, when I try to install it, it returns error that I have already sent. What else??

shanisi 05-23-2011 09:09 AM
You are right that it's the same software for which you posted following link: http://lammps.sandia.gov/

TB0ne 05-23-2011 10:11 AM
Quote:
Originally Posted by shanisi (Post 4364582)
I am trying to install lammps which is a molecular dynamics package. According to their instructions, when I try to install it, it returns error that I have already sent. What else??
Now that you've provided some clear answers and details, that gives folks more things to work with. And you've built it according to their instructions?? From their website here:
http://lammps.sandia.gov/doc/Section_start.html#2_2
Quote:
Common errors that can occur when making LAMMPS:

(1) If the make command breaks immediately with errors that indicate it can't find files with a "*" in their names, this can be because your machine's make doesn't support wildcard expansion in a makefile. Try gmake instead of make. If that doesn't work, try using a -f switch with your make command to use Makefile.list which explicitly lists all the needed files, e.g.

make makelist
make -f Makefile.list linux
gmake -f Makefile.list mac
Have you tried to run it as root, instead of using SUDO?

shanisi 05-23-2011 10:28 AM
Now

With root and following commands:

1. make -f Makefile.list linux

root@shanisi:/opt/lammps-7May11/src# make -f Makefile.list linux
make[1]: Entering directory `/opt/lammps-7May11/src/Obj_linux'
Makefile:104: angle_charmm.d: No such file or directory
Makefile:104: angle_class2.d: No such file or directory
Makefile:104: angle_cosine.d: No such file or directory
Makefile:104: angle_cosine_delta.d: No such file or directory
Makefile:104: angle_cosine_periodic.d: No such file or directory
Makefile:104: angle_cosine_squared.d: No such file or directory
Makefile:104: angle.d: No such file or directory
Makefile:104: angle_harmonic.d: No such file or directory
Makefile:104: angle_hybrid.d: No such file or directory
Makefile:104: angle_table.d: No such file or directory
Makefile:104: atom.d: No such file or directory
Makefile:104: atom_vec_angle.d: No such file or directory
Makefile:104: atom_vec_atomic.d: No such file or directory
Makefile:104: atom_vec_bond.d: No such file or directory
Makefile:104: atom_vec_charge.d: No such file or directory
Makefile:104: atom_vec.d: No such file or directory
Makefile:104: atom_vec_dipole.d: No such file or directory
Makefile:104: atom_vec_ellipsoid.d: No such file or directory
Makefile:104: atom_vec_full.d: No such file or directory
Makefile:104: atom_vec_hybrid.d: No such file or directory
Makefile:104: atom_vec_molecular.d: No such file or directory
Makefile:104: atom_vec_peri.d: No such file or directory
Makefile:104: atom_vec_sphere.d: No such file or directory
Makefile:104: bond_class2.d: No such file or directory
Makefile:104: bond.d: No such file or directory
Makefile:104: bond_fene.d: No such file or directory
Makefile:104: bond_fene_expand.d: No such file or directory
Makefile:104: bond_harmonic.d: No such file or directory
Makefile:104: bond_hybrid.d: No such file or directory
Makefile:104: bond_morse.d: No such file or directory
Makefile:104: bond_nonlinear.d: No such file or directory
Makefile:104: bond_quartic.d: No such file or directory
Makefile:104: bond_table.d: No such file or directory
Makefile:104: change_box.d: No such file or directory
Makefile:104: comm.d: No such file or directory
Makefile:104: compute_angle_local.d: No such file or directory
Makefile:104: compute_atom_molecule.d: No such file or directory
Makefile:104: compute_bond_local.d: No such file or directory
Makefile:104: compute_centro_atom.d: No such file or directory
Makefile:104: compute_cluster_atom.d: No such file or directory
Makefile:104: compute_cna_atom.d: No such file or directory
Makefile:104: compute_com.d: No such file or directory
Makefile:104: compute_com_molecule.d: No such file or directory
Makefile:104: compute_coord_atom.d: No such file or directory
Makefile:104: compute.d: No such file or directory
Makefile:104: compute_damage_atom.d: No such file or directory
Makefile:104: compute_dihedral_local.d: No such file or directory
Makefile:104: compute_displace_atom.d: No such file or directory
Makefile:104: compute_erotate_asphere.d: No such file or directory
Makefile:104: compute_erotate_sphere.d: No such file or directory
Makefile:104: compute_event_displace.d: No such file or directory
Makefile:104: compute_group_group.d: No such file or directory
Makefile:104: compute_gyration.d: No such file or directory
Makefile:104: compute_gyration_molecule.d: No such file or directory
Makefile:104: compute_heat_flux.d: No such file or directory
Makefile:104: compute_improper_local.d: No such file or directory
Makefile:104: compute_ke_atom.d: No such file or directory
Makefile:104: compute_ke.d: No such file or directory
Makefile:104: compute_msd.d: No such file or directory
Makefile:104: compute_msd_molecule.d: No such file or directory
Makefile:104: compute_pair.d: No such file or directory
Makefile:104: compute_pair_local.d: No such file or directory
Makefile:104: compute_pe_atom.d: No such file or directory
Makefile:104: compute_pe.d: No such file or directory
Makefile:104: compute_pressure.d: No such file or directory
Makefile:104: compute_property_atom.d: No such file or directory
Makefile:104: compute_property_local.d: No such file or directory
Makefile:104: compute_property_molecule.d: No such file or directory
Makefile:104: compute_rdf.d: No such file or directory
Makefile:104: compute_reduce.d: No such file or directory
Makefile:104: compute_reduce_region.d: No such file or directory
Makefile:104: compute_stress_atom.d: No such file or directory
Makefile:104: compute_temp_asphere.d: No such file or directory
Makefile:104: compute_temp_com.d: No such file or directory
Makefile:104: compute_temp.d: No such file or directory
Makefile:104: compute_temp_deform.d: No such file or directory
Makefile:104: compute_temp_partial.d: No such file or directory
Makefile:104: compute_temp_profile.d: No such file or directory
Makefile:104: compute_temp_ramp.d: No such file or directory
Makefile:104: compute_temp_region.d: No such file or directory
Makefile:104: compute_temp_sphere.d: No such file or directory
Makefile:104: compute_ti.d: No such file or directory
Makefile:104: create_atoms.d: No such file or directory
Makefile:104: create_box.d: No such file or directory
Makefile:104: delete_atoms.d: No such file or directory
Makefile:104: delete_bonds.d: No such file or directory
Makefile:104: dihedral_charmm.d: No such file or directory
Makefile:104: dihedral_class2.d: No such file or directory
Makefile:104: dihedral.d: No such file or directory
Makefile:104: dihedral_harmonic.d: No such file or directory
Makefile:104: dihedral_helix.d: No such file or directory
Makefile:104: dihedral_hybrid.d: No such file or directory
Makefile:104: dihedral_multi_harmonic.d: No such file or directory
Makefile:104: dihedral_opls.d: No such file or directory
Makefile:104: displace_atoms.d: No such file or directory
Makefile:104: displace_box.d: No such file or directory
Makefile:104: domain.d: No such file or directory
Makefile:104: dump_atom.d: No such file or directory
Makefile:104: dump_cfg.d: No such file or directory
Makefile:104: dump.d: No such file or directory
Makefile:104: dump_custom.d: No such file or directory
Makefile:104: dump_dcd.d: No such file or directory
Makefile:104: dump_local.d: No such file or directory
Makefile:104: dump_xtc.d: No such file or directory
Makefile:104: dump_xyz.d: No such file or directory
Makefile:104: error.d: No such file or directory
Makefile:104: ewald.d: No such file or directory
Makefile:104: fft3d.d: No such file or directory
Makefile:104: fft3d_wrap.d: No such file or directory
Makefile:104: finish.d: No such file or directory
Makefile:104: fix_adapt.d: No such file or directory
Makefile:104: fix_addforce.d: No such file or directory
Makefile:104: fix_ave_atom.d: No such file or directory
Makefile:104: fix_ave_correlate.d: No such file or directory
Makefile:104: fix_aveforce.d: No such file or directory
Makefile:104: fix_ave_histo.d: No such file or directory
Makefile:104: fix_ave_spatial.d: No such file or directory
Makefile:104: fix_ave_time.d: No such file or directory
Makefile:104: fix_bond_break.d: No such file or directory
Makefile:104: fix_bond_create.d: No such file or directory
Makefile:104: fix_bond_swap.d: No such file or directory
Makefile:104: fix_box_relax.d: No such file or directory
Makefile:104: fix.d: No such file or directory
Makefile:104: fix_deform.d: No such file or directory
Makefile:104: fix_deposit.d: No such file or directory
Makefile:104: fix_drag.d: No such file or directory
Makefile:104: fix_dt_reset.d: No such file or directory
Makefile:104: fix_efield.d: No such file or directory
Makefile:104: fix_enforce2d.d: No such file or directory
Makefile:104: fix_evaporate.d: No such file or directory
Makefile:104: fix_event.d: No such file or directory
Makefile:104: fix_event_prd.d: No such file or directory
Makefile:104: fix_event_tad.d: No such file or directory
Makefile:104: fix_external.d: No such file or directory
Makefile:104: fix_freeze.d: No such file or directory
Makefile:104: fix_gpu.d: No such file or directory
Makefile:104: fix_gravity.d: No such file or directory
Makefile:104: fix_heat.d: No such file or directory
Makefile:104: fix_indent.d: No such file or directory
Makefile:104: fix_langevin.d: No such file or directory
Makefile:104: fix_lineforce.d: No such file or directory
Makefile:104: fix_minimize.d: No such file or directory
Makefile:104: fix_momentum.d: No such file or directory
Makefile:104: fix_move.d: No such file or directory
Makefile:104: fix_msst.d: No such file or directory
Makefile:104: fix_neb.d: No such file or directory
Makefile:104: fix_nh_asphere.d: No such file or directory
Makefile:104: fix_nh.d: No such file or directory
Makefile:104: fix_nh_sphere.d: No such file or directory
Makefile:104: fix_nph_asphere.d: No such file or directory
Makefile:104: fix_nph.d: No such file or directory
Makefile:104: fix_nph_sphere.d: No such file or directory
Makefile:104: fix_npt_asphere.d: No such file or directory
Makefile:104: fix_npt.d: No such file or directory
Makefile:104: fix_npt_sphere.d: No such file or directory
Makefile:104: fix_nve_asphere.d: No such file or directory
Makefile:104: fix_nve.d: No such file or directory
Makefile:104: fix_nve_limit.d: No such file or directory
Makefile:104: fix_nve_noforce.d: No such file or directory
Makefile:104: fix_nve_sphere.d: No such file or directory
Makefile:104: fix_nvt_asphere.d: No such file or directory
Makefile:104: fix_nvt.d: No such file or directory
Makefile:104: fix_nvt_sllod.d: No such file or directory
Makefile:104: fix_nvt_sphere.d: No such file or directory
Makefile:104: fix_orient_fcc.d: No such file or directory
Makefile:104: fix_peri_neigh.d: No such file or directory
Makefile:104: fix_planeforce.d: No such file or directory
Makefile:104: fix_poems.d: No such file or directory
Makefile:104: fix_pour.d: No such file or directory
Makefile:104: fix_press_berendsen.d: No such file or directory
Makefile:104: fix_print.d: No such file or directory
Makefile:104: fix_qeq_comb.d: No such file or directory
Makefile:104: fix_read_restart.d: No such file or directory
Makefile:104: fix_reax_bonds.d: No such file or directory
Makefile:104: fix_recenter.d: No such file or directory
Makefile:104: fix_respa.d: No such file or directory
Makefile:104: fix_rigid.d: No such file or directory
Makefile:104: fix_rigid_nve.d: No such file or directory
Makefile:104: fix_rigid_nvt.d: No such file or directory
Makefile:104: fix_setforce.d: No such file or directory
Makefile:104: fix_shake.d: No such file or directory
Makefile:104: fix_shear_history.d: No such file or directory
Makefile:104: fix_spring.d: No such file or directory
Makefile:104: fix_spring_rg.d: No such file or directory
Makefile:104: fix_spring_self.d: No such file or directory
Makefile:104: fix_store_force.d: No such file or directory
Makefile:104: fix_store_state.d: No such file or directory
Makefile:104: fix_temp_berendsen.d: No such file or directory
Makefile:104: fix_temp_rescale.d: No such file or directory
Makefile:104: fix_thermal_conductivity.d: No such file or directory
Makefile:104: fix_tmd.d: No such file or directory
Makefile:104: fix_ttm.d: No such file or directory
Makefile:104: fix_viscosity.d: No such file or directory
Makefile:104: fix_viscous.d: No such file or directory
Makefile:104: fix_wall_colloid.d: No such file or directory
Makefile:104: fix_wall.d: No such file or directory
Makefile:104: fix_wall_gran.d: No such file or directory
Makefile:104: fix_wall_harmonic.d: No such file or directory
Makefile:104: fix_wall_lj126.d: No such file or directory
Makefile:104: fix_wall_lj93.d: No such file or directory
Makefile:104: fix_wall_reflect.d: No such file or directory
Makefile:104: fix_wall_region.d: No such file or directory
Makefile:104: force.d: No such file or directory
Makefile:104: group.d: No such file or directory
Makefile:104: improper_class2.d: No such file or directory
Makefile:104: improper.d: No such file or directory
Makefile:104: improper_cvff.d: No such file or directory
Makefile:104: improper_harmonic.d: No such file or directory
Makefile:104: improper_hybrid.d: No such file or directory
Makefile:104: improper_umbrella.d: No such file or directory
Makefile:104: input.d: No such file or directory
Makefile:104: integrate.d: No such file or directory
Makefile:104: irregular.d: No such file or directory
Makefile:104: kspace.d: No such file or directory
Makefile:104: lammps.d: No such file or directory
Makefile:104: lattice.d: No such file or directory
Makefile:104: library.d: No such file or directory
Makefile:104: main.d: No such file or directory
Makefile:104: math_extra.d: No such file or directory
Makefile:104: memory.d: No such file or directory
Makefile:104: min_cg.d: No such file or directory
Makefile:104: min.d: No such file or directory
Makefile:104: min_fire.d: No such file or directory
Makefile:104: min_hftn.d: No such file or directory
Makefile:104: minimize.d: No such file or directory
Makefile:104: min_linesearch.d: No such file or directory
Makefile:104: min_quickmin.d: No such file or directory
Makefile:104: min_sd.d: No such file or directory
Makefile:104: modify.d: No such file or directory
Makefile:104: neb.d: No such file or directory
Makefile:104: neigh_bond.d: No such file or directory
Makefile:104: neighbor.d: No such file or directory
Makefile:104: neigh_derive.d: No such file or directory
Makefile:104: neigh_full.d: No such file or directory
Makefile:104: neigh_gran.d: No such file or directory
Makefile:104: neigh_half_bin.d: No such file or directory
Makefile:104: neigh_half_multi.d: No such file or directory
Makefile:104: neigh_half_nsq.d: No such file or directory
Makefile:104: neigh_list.d: No such file or directory
Makefile:104: neigh_request.d: No such file or directory
Makefile:104: neigh_respa.d: No such file or directory
Makefile:104: neigh_stencil.d: No such file or directory
Makefile:104: output.d: No such file or directory
Makefile:104: pack.d: No such file or directory
Makefile:104: pair_airebo.d: No such file or directory
Makefile:104: pair_born_coul_long.d: No such file or directory
Makefile:104: pair_born.d: No such file or directory
Makefile:104: pair_buck_coul_cut.d: No such file or directory
Makefile:104: pair_buck_coul_long.d: No such file or directory
Makefile:104: pair_buck.d: No such file or directory
Makefile:104: pair_colloid.d: No such file or directory
Makefile:104: pair_comb.d: No such file or directory
Makefile:104: pair_coul_cut.d: No such file or directory
Makefile:104: pair_coul_debye.d: No such file or directory
Makefile:104: pair_coul_long.d: No such file or directory
Makefile:104: pair.d: No such file or directory
Makefile:104: pair_dipole_cut.d: No such file or directory
Makefile:104: pair_dpd.d: No such file or directory
Makefile:104: pair_dpd_tstat.d: No such file or directory
Makefile:104: pair_dsmc.d: No such file or directory
Makefile:104: pair_eam_alloy.d: No such file or directory
Makefile:104: pair_eam_alloy_opt.d: No such file or directory
Makefile:104: pair_eam.d: No such file or directory
Makefile:104: pair_eam_fs.d: No such file or directory
Makefile:104: pair_eam_fs_opt.d: No such file or directory
Makefile:104: pair_eam_opt.d: No such file or directory
Makefile:104: pair_eim.d: No such file or directory
Makefile:104: pair_gauss.d: No such file or directory
Makefile:104: pair_gayberne.d: No such file or directory
Makefile:104: pair_gayberne_gpu.d: No such file or directory
Makefile:104: pair_gran_hertz_history.d: No such file or directory
Makefile:104: pair_gran_hooke.d: No such file or directory
Makefile:104: pair_gran_hooke_history.d: No such file or directory
Makefile:104: pair_hbond_dreiding_lj.d: No such file or directory
Makefile:104: pair_hbond_dreiding_morse.d: No such file or directory
Makefile:104: pair_hybrid.d: No such file or directory
Makefile:104: pair_hybrid_overlay.d: No such file or directory
Makefile:104: pair_lj96_cut.d: No such file or directory
Makefile:104: pair_lj96_cut_gpu.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_charmm.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_charmm_implicit.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_long.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_long_gpu.d: No such file or directory
Makefile:104: pair_lj_charmm_coul_long_opt.d: No such file or directory
Makefile:104: pair_lj_class2_coul_cut.d: No such file or directory
Makefile:104: pair_lj_class2_coul_long.d: No such file or directory
Makefile:104: pair_lj_class2.d: No such file or directory
Makefile:104: pair_lj_cut_coul_cut.d: No such file or directory
Makefile:104: pair_lj_cut_coul_cut_gpu.d: No such file or directory
Makefile:104: pair_lj_cut_coul_debye.d: No such file or directory
Makefile:104: pair_lj_cut_coul_long.d: No such file or directory
Makefile:104: pair_lj_cut_coul_long_gpu.d: No such file or directory
Makefile:104: pair_lj_cut_coul_long_tip4p.d: No such file or directory
Makefile:104: pair_lj_cut.d: No such file or directory
Makefile:104: pair_lj_cut_gpu.d: No such file or directory
Makefile:104: pair_lj_cut_opt.d: No such file or directory
Makefile:104: pair_lj_expand.d: No such file or directory
Makefile:104: pair_lj_expand_gpu.d: No such file or directory
Makefile:104: pair_lj_gromacs_coul_gromacs.d: No such file or directory
Makefile:104: pair_lj_gromacs.d: No such file or directory
Makefile:104: pair_lj_smooth.d: No such file or directory
Makefile:104: pair_lubricate.d: No such file or directory
Makefile:104: pair_meam.d: No such file or directory
Makefile:104: pair_morse.d: No such file or directory
Makefile:104: pair_morse_gpu.d: No such file or directory
Makefile:104: pair_morse_opt.d: No such file or directory
Makefile:104: pair_peri_lps.d: No such file or directory
Makefile:104: pair_peri_pmb.d: No such file or directory
Makefile:104: pair_reax.d: No such file or directory
Makefile:104: pair_resquared.d: No such file or directory
Makefile:104: pair_soft.d: No such file or directory
Makefile:104: pair_sw.d: No such file or directory
Makefile:104: pair_table.d: No such file or directory
Makefile:104: pair_tersoff.d: No such file or directory
Makefile:104: pair_tersoff_zbl.d: No such file or directory
Makefile:104: pair_yukawa_colloid.d: No such file or directory
Makefile:104: pair_yukawa.d: No such file or directory
Makefile:104: pppm.d: No such file or directory
Makefile:104: pppm_gpu.d: No such file or directory
Makefile:104: pppm_gpu_double.d: No such file or directory
Makefile:104: pppm_gpu_single.d: No such file or directory
Makefile:104: pppm_tip4p.d: No such file or directory
Makefile:104: prd.d: No such file or directory
Makefile:104: random_mars.d: No such file or directory
Makefile:104: random_park.d: No such file or directory
Makefile:104: read_data.d: No such file or directory
Makefile:104: read_restart.d: No such file or directory
Makefile:104: region_block.d: No such file or directory
Makefile:104: region_cone.d: No such file or directory
Makefile:104: region.d: No such file or directory
Makefile:104: region_cylinder.d: No such file or directory
Makefile:104: region_intersect.d: No such file or directory
Makefile:104: region_plane.d: No such file or directory
Makefile:104: region_prism.d: No such file or directory
Makefile:104: region_sphere.d: No such file or directory
Makefile:104: region_union.d: No such file or directory
Makefile:104: remap.d: No such file or directory
Makefile:104: remap_wrap.d: No such file or directory
Makefile:104: replicate.d: No such file or directory
Makefile:104: respa.d: No such file or directory
Makefile:104: run.d: No such file or directory
Makefile:104: set.d: No such file or directory
Makefile:104: special.d: No such file or directory
Makefile:104: tad.d: No such file or directory
Makefile:104: temper.d: No such file or directory
Makefile:104: thermo.d: No such file or directory
Makefile:104: timer.d: No such file or directory
Makefile:104: universe.d: No such file or directory
Makefile:104: update.d: No such file or directory
Makefile:104: variable.d: No such file or directory
mpiicc -O -DLAMMPS_GZIP -I../../lib/reax -I../../lib/poems -I../../lib/meam -DMPICH_SKIP_MPICXX -I/usr/local/fft -DFFT_FFTW -M variable.cpp > variable.d
/bin/sh: mpiicc: not found
make[1]: *** [variable.d] Error 127
make[1]: Leaving directory `/opt/lammps-7May11/src/Obj_linux'
make: *** [linux] Error 2
root@shanisi:/opt/lammps-7May11/src#

shanisi 05-23-2011 10:30 AM
2. gmake -f Makefile.list linux

root@shanisi:/opt/lammps-7May11/src# gmake -f Makefile.list linux
No command 'gmake' found, did you mean:
Command 'tmake' from package 'tmake' (universe)
Command 'hmake' from package 'hmake' (universe)
Command 'guake' from package 'guake' (universe)
Command 'imake' from package 'xutils-dev' (main)
Command 'mmake' from package 'mmake' (universe)
Command 'omake' from package 'omake' (universe)
Command 'jmake' from package 'dist' (universe)
Command 'make' from package 'make' (main)
Command 'dmake' from package 'dmake' (main)
Command 'vmake' from package 'hdf4-tools' (universe)
Command 'pmake' from package 'pmake' (main)
Command 'qmake' from package 'qt4-qmake' (main)
Command 'qmake' from package 'qt3-dev-tools' (main)
Command 'cmake' from package 'cmake' (main)
gmake: command not found
root@shanisi:/opt/lammps-7May11/src# ^C
root@shanisi:/opt/lammps-7May11/src#

TB0ne 05-23-2011 10:40 AM
Quote:
Originally Posted by shanisi (Post 4364652)
2. gmake -f Makefile.list linux
Are you running "make makelist" as it was posted in the instructions??? Have you tried to install gmake?

Most importantly, have you tried to check the documentation/forums on the LAMMPS site?
http://lammps.sandia.gov/threads/msg18949.html


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