I don't think that windows will run anything you put in the netlogon directory, I think it looks for specific filenames in the netlogon share to run, I just pulled out one of my old MCSE books and it only mentions putting a config.pol file in the netlogon share and of course this file is used to change settings like forcing a win 9x box to log in so they can't hit cancel, and putting on a logon banner and fun things like that :-) I don't have any win 9x machines here to see if you can map a drive though the config.pol file or not.
Now this is not what you asked for really but if this is only for a couple of machines why not just put the batch file to map the drives in the systems's startup folder in the start menu then it would run it each time you log in. Just a thought, hopefully I have sent you in a positive direction.
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