I walked into the same trap a while ago.
As it turned out, RH-Lokkit had made up some
simplistic iptables rules for me, which weren't
flushed before I ran my own script.
Only a day later, when I checked with
iptalbes --list did I find out that my whole box
was wide-open because the old rules were
still accepting every packet that made it to the
INPUT chain.
Thank you RH for UnLokking my firewall...