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I have installed centos 5.3 64bit on my machine using pendrive. installation completed successfully. but now i am not able to boot my system without pendrive.
Do you get the Grub screen when your pendrive is not attached or only when it is attached? I would agree with yooy that you do not have Grub installed to your internal hard drive. I would suggest you boot with the pen drive, open a terminal, log in as root and run the command: fdisk -l (Lower case Letter L) and post this partition information so you can get more specific instructions on installing Grub to the mbr.
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