linux box very slow especially on upgrading

chiendarret · 09-17-2022, 10:12 AM

A raid1 ASUS H81M-K on my lan, now used for backup, has become slow on starting and extremely slow on upgrading

Quote:

Debian 11, 5.10.0-17-amd64

Quote:

Filesystem Size Used Avail Use% Mounted on
udev 3.9G 0 3.9G 0% /dev
tmpfs 790M 1.3M 789M 1% /run
/dev/mapper/vg1-root 3.2G 1.2G 1.9G 38% /
/dev/mapper/vg1-usr 55G 5.0G 47G 10% /usr
tmpfs 3.9G 0 3.9G 0% /dev/shm
tmpfs 5.0M 4.0K 5.0M 1% /run/lock
/dev/md0 266M 167M 85M 67% /boot
/dev/mapper/vg1-tmp 5.5G 100K 5.2G 1% /tmp
/dev/mapper/vg1-opt 19G 9.0G 8.4G 52% /opt
/dev/mapper/vg1-var 10G 1015M 8.5G 11% /var
/dev/mapper/vg1-home 338G 276G 45G 87% /home
tmpfs 790M 52K 790M 1% /run/user/1000

Quote:

lscpu
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
Address sizes: 39 bits physical, 48 bits virtual
CPU(s): 4
On-line CPU(s) list: 0-3
Thread(s) per core: 2
Core(s) per socket: 2
Socket(s): 1
NUMA node(s): 1
Vendor ID: GenuineIntel
CPU family: 6
Model: 60
Model name: Intel(R) Core(TM) i3-4160 CPU @ 3.60GHz

Quote:

$ lspci
00:00.0 Host bridge: Intel Corporation 4th Gen Core Processor DRAM Controller (rev 06)
00:01.0 PCI bridge: Intel Corporation Xeon E3-1200 v3/4th Gen Core Processor PCI Express x16 Controller (rev 06)
00:14.0 USB controller: Intel Corporation 8 Series/C220 Series Chipset Family USB xHCI (rev 05)
00:16.0 Communication controller: Intel Corporation 8 Series/C220 Series Chipset Family MEI Controller #1 (rev 04)
00:1a.0 USB controller: Intel Corporation 8 Series/C220 Series Chipset Family USB EHCI #2 (rev 05)
00:1b.0 Audio device: Intel Corporation 8 Series/C220 Series Chipset High Definition Audio Controller (rev 05)
00:1c.0 PCI bridge: Intel Corporation 8 Series/C220 Series Chipset Family PCI Express Root Port #1 (rev d5)
00:1c.2 PCI bridge: Intel Corporation 8 Series/C220 Series Chipset Family PCI Express Root Port #3 (rev d5)
00:1d.0 USB controller: Intel Corporation 8 Series/C220 Series Chipset Family USB EHCI #1 (rev 05)
00:1f.0 ISA bridge: Intel Corporation H81 Express LPC Controller (rev 05)
00:1f.2 SATA controller: Intel Corporation 8 Series/C220 Series Chipset Family 6-port SATA Controller 1 [AHCI mode] (rev 05)
00:1f.3 SMBus: Intel Corporation 8 Series/C220 Series Chipset Family SMBus Controller (rev 05)
01:00.0 VGA compatible controller: NVIDIA Corporation G98 [GeForce 8400 GS Rev. 2] (rev a1)
03:00.0 Ethernet controller: Realtek Semiconductor Co., Ltd. RTL8111/8168/8411 PCI Express Gigabit Ethernet Controller (rev 0c)

Quote:

$ lsusb
Bus 003 Device 002: ID 8087:8000 Intel Corp. Integrated Rate Matching Hub
Bus 003 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
Bus 001 Device 002: ID 8087:8008 Intel Corp. Integrated Rate Matching Hub
Bus 001 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
Bus 004 Device 001: ID 1d6b:0003 Linux Foundation 3.0 root hub
Bus 002 Device 002: ID 04f2:0939 Chicony Electronics Co., Ltd Amazon Basics mouse
Bus 002 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub

Quote:

$ lsblk
NAME MAJ:MIN RM SIZE RO TYPE MOUNTPOINT
sda 8:0 0 465.8G 0 disk
├─sda1 8:1 0 285M 0 part
│ └─md0 9:0 0 284.7M 0 raid1 /boot
└─sda2 8:2 0 465.2G 0 part
└─md1 9:1 0 465.1G 0 raid1
├─vg1-root 253:0 0 3.3G 0 lvm /
├─vg1-usr 253:1 0 55.9G 0 lvm /usr
├─vg1-opt 253:2 0 18.6G 0 lvm /opt
├─vg1-var 253:3 0 10.2G 0 lvm /var
├─vg1-tmp 253:4 0 5.6G 0 lvm /tmp
├─vg1-swap 253:5 0 27.9G 0 lvm [SWAP]
└─vg1-home 253:6 0 343.5G 0 lvm /home
sdb 8:16 0 465.8G 0 disk
├─sdb1 8:17 0 285M 0 part
│ └─md0 9:0 0 284.7M 0 raid1 /boot
└─sdb2 8:18 0 465.2G 0 part
└─md1 9:1 0 465.1G 0 raid1
├─vg1-root 253:0 0 3.3G 0 lvm /
├─vg1-usr 253:1 0 55.9G 0 lvm /usr
├─vg1-opt 253:2 0 18.6G 0 lvm /opt
├─vg1-var 253:3 0 10.2G 0 lvm /var
├─vg1-tmp 253:4 0 5.6G 0 lvm /tmp
├─vg1-swap 253:5 0 27.9G 0 lvm [SWAP]
└─vg1-home 253:6 0 343.5G 0 lvm /home
sr0 11:0 1 1024M 0 rom

Thanks for advice on fixing the issue

jefro · 09-17-2022, 11:32 AM

Run memtest to see if it is OK and showing what you expect.
Run SMART diags.

??

chiendarret · 09-17-2022, 01:04 PM

Thanks, I'll do that.
That issue lasted from some weeks although there was no problem of disk space. Now, the last massive upgrading, leading to the situation that I have reported, has set everything in order (I had posted before restarting). Does that point to a software problem having slowed down the box?

jefro · 09-21-2022, 04:18 PM

In some cases the amount of files on update can cause this by clogging the drive.
If that happens to me I try to only select some and go and then some and go.

mrmazda · 09-21-2022, 05:57 PM

What does cat /proc/mdstat have to say? Is md1 repeatedly resyncing?

Are you running these lethargic operations within X while doing other things? I would expect that i3-4160's IGP to work better than that ancient GeForce. I'm running almost the same setup here, except the OS is on SSD and only data is on rusty RAID:

Code:

> inxi -GCdxxz
CPU:
  Info: dual core model: Intel Core i3-4150T bits: 64 type: MT MCP
    arch: Haswell level: v3 rev: 3 cache: L1: 128 KiB L2: 512 KiB L3: 3 MiB
  Speed (MHz): avg: 2785 high: 2886 min/max: 800/3000 cores: 1: 2886
    2: 2728 3: 2700 4: 2827 bogomips: 23999
  Flags: avx avx2 ht lm nx pae sse sse2 sse3 sse4_1 sse4_2 ssse3 vmx
Graphics:
  Device-1: Intel 4th Generation Core Processor Family Integrated Graphics
    vendor: Micro-Star MSI driver: i915 v: kernel arch: Gen-7.5 ports:
    active: HDMI-A-1 empty: HDMI-A-2,VGA-1 bus-ID: 00:02.0 chip-ID: 8086:041e
  Display: x11 server: X.Org v: 1.20.3 driver: X: loaded: modesetting
    unloaded: fbdev,vesa alternate: intel gpu: i915 display-ID: :0 screens: 1
  Screen-1: 0 s-res: 1920x1200 s-dpi: 120
  Monitor-1: HDMI-A-1 mapped: HDMI-1 model: Samsung SMS24A850
    res: 1920x1200 dpi: 94 diag: 611mm (24.1")
  OpenGL: renderer: Mesa Intel HD Graphics 4400 (HSW GT2) v: 4.6 Mesa
    21.2.4 compat-v: 3.1 direct render: Yes
Drives:
  Local Storage: total: raw: 1.93 TiB usable: 1.03 TiB used: 749.39 GiB
    (71.2%)
  ID-1: /dev/sda vendor: Patriot model: Burst Elite 120GB size: 111.79 GiB
    speed: 6.0 Gb/s serial: <filter>
  ID-2: /dev/sdb vendor: Seagate model: ST1000DM003-1CH162 size: 931.51 GiB
    speed: 6.0 Gb/s serial: <filter>
  ID-3: /dev/sdc vendor: Seagate model: ST1000NM0011 size: 931.51 GiB
    speed: 3.0 Gb/s serial: <filter>