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During boot up (correct me if I'm wrong) but all the startup programs are run as root.
What you could do is create a script that starts when the user logs on that runs the program..
Unfortunately, at that point in the process the system can't differentiate between users specifically because no one has logged in. Mounting filesystems, initializing interfaces and services, loading modules, etc. are events handled by init (and the proccesses spawned by init) as defined, for the most part, by global config files and scripts.
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