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Old 04-17-2009, 07:50 PM   #1
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Make sort ignore comment lines

I have a file in the following format

# comment 1
# comment 2
0 0 BBAAC 16
0 16 AACAD 16
0 32 ACDAC 16
I want to sort(1) it by the third column as string, which can be easily done by

sort --key=3 my_file
However, after sort, the first two comment lines may not be still at the head of the file. Is there a way to tell sort(1) to ignore the comment lines?

I assume there is no such convenient way. Then what I did is to
1) grep the comment lines to my_comments
2) delete the comment lines from my_file
3) sort my_file
4) concatenate my_comments with my_file

Step 1 can be easily done by

head -n 20 my_file | grep \# > my_comments
assuming there is always no more than 20 comment lines.

Step 2 is the source of headache. There seems no way to truncate file at head. I need to grep or sed my_file to a temporary new file, and sort the temporary file instead in step 3, right? If my_file is large, say 1GB, this will exhibit high performance and storage overhead. Is there in-place way?

Step 4, how to do it quickly without commands like

cat my_comments temp_file > my_file

In one word, is there a way to do in-place sort by taking advantage of knowing that the comment lines are few and only appear at head?

Thank you very much!
Old 04-17-2009, 08:56 PM   #2
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grep -v "^#" file |sort ...
Old 04-17-2009, 09:38 PM   #3
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Or, if you don't have other comments in the file:

grep /^#/ file >/tmp/head;grep -v /^#/ | sort ... >/tmp/body; cat /tmp/head /tmp/body;rm -f /tmp/head /tmp/body

Note: Untested code.
Old 04-17-2009, 10:44 PM   #4
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Thanks, folks. After having some understanding about sort's algorithm, I know that directly calling sort and grep | sort has no performance difference.

I noticed that zsh has ability to concatenate files with redirection (using >>). Thus the script can be

grep "^#" my_file > my_sorted
grep -v "^#" my_file | sort >> my_sorted
and the sort check and be done by

if [[ -n $(grep -v "^#" my_file | sort --check 2>&1) ]]; then
Perfect! Linux is really fascinating...

Last edited by CrendKing; 04-17-2009 at 11:30 PM.


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